PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_00897.1_g00011.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | ARF | ||||||||
Protein Properties | Length: 632aa MW: 70011.5 Da PI: 8.4532 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 77.6 | 1.3e-24 | 116 | 217 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDf 79 f k+lt+sd+++ g +++p+ +ae++ +++ + t+ +d +g +W++++iyr++++r++lt+GW++Fv++++L +gD+ Rsa1.0_00897.1_g00011.1 116 FAKTLTQSDANNGGGFSVPRYCAETIfprldynAEPPVQ--TILAKDVHGDVWKFRHIYRGTPRRHLLTTGWSNFVNQKKLVAGDS 199 89****************************985444444..8999***************************************** PP EEEEE-SSSEE..EEEEE-S CS B3 80 vvFkldgrsefelvvkvfrk 99 +vF+ + +++ l+v+++r+ Rsa1.0_00897.1_g00011.1 200 IVFM--RAESGDLCVGIRRA 217 ****..4489999*****97 PP | |||||||
2 | Auxin_resp | 111.8 | 6.5e-37 | 271 | 353 | 2 | 83 |
Auxin_resp 2 ahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 a a ++ +FevvY+Pras+seF+vk+ + ++a++++++ GmRfkmafetedss++++ +Gtv++vs +dp+rWpnS+Wr+L+ Rsa1.0_00897.1_g00011.1 271 AALAVSGRAFEVVYYPRASSSEFCVKALDARAAMRIPWCSGMRFKMAFETEDSSRISWfMGTVSAVSVSDPIRWPNSPWRLLQ 353 66788999*************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 5.9E-39 | 106 | 221 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.83E-29 | 111 | 219 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.58E-21 | 114 | 216 | No hit | No description |
PROSITE profile | PS50863 | 13.267 | 116 | 218 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.7E-22 | 116 | 218 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.5E-22 | 116 | 217 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 5.1E-31 | 270 | 353 | IPR010525 | Auxin response factor |
PROSITE profile | PS51745 | 18.289 | 546 | 626 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 632 aa Download sequence Send to blast |
MNPMRSGSEK GLDPQLWHAC AGGMVRMPPM NSKVFYFPQG HAENAYDRVD FKNLPLPPMV 60 LCRVLAIKYM ADPESDEVFA KLRLIPLKDD NFVDHDGRQD SSGFSESNSS EKTPSFAKTL 120 TQSDANNGGG FSVPRYCAET IFPRLDYNAE PPVQTILAKD VHGDVWKFRH IYRGTPRRHL 180 LTTGWSNFVN QKKLVAGDSI VFMRAESGDL CVGIRRAKRG GIGGNGPEYS AGWNPIGGSC 240 GGYSSLLRDD SNCSLADRKG KVTAESVVEA AALAVSGRAF EVVYYPRASS SEFCVKALDA 300 RAAMRIPWCS GMRFKMAFET EDSSRISWFM GTVSAVSVSD PIRWPNSPWR LLQVAWDEPD 360 LLQNVKRVNP WLVELVSNVH PMPLPSFSPP RKKMRLPQHQ DYSTRISVPS FPSNPLIRSS 420 NPLSSVLDNV PVGLQGARHN AHQYYGLSSS DLHHYYLNRP PPPPPSSTPP PLGFRNIDSK 480 NEKGFCFLTM GTSPGSDTES KKSHIVLFGK LILPEEQKGS KDVEKTQIPP VCSDKAHEAL 540 GLGLETRHCK VFMESDDVGR TLDLSVLGSY EELSRKLSDM FGIQKSEMLS SVHYRDASGA 600 IKYPGKEPFS EFLKTARRLT ILTEQGSESV VV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 2e-76 | 5 | 374 | 43 | 388 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_00897.1_g00011.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JN979477 | 0.0 | JN979477.1 Brassica rapa subsp. pekinensis auxin response factor 16-1 (ARF16-1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018470497.1 | 0.0 | PREDICTED: auxin response factor 16-like | ||||
Swissprot | Q93YR9 | 0.0 | ARFP_ARATH; Auxin response factor 16 | ||||
TrEMBL | A0A398AJP5 | 0.0 | A0A398AJP5_BRACM; Auxin response factor | ||||
STRING | Bra011162.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM580 | 27 | 130 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G30080.1 | 0.0 | auxin response factor 16 |