PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00897.1_g00003.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family HB-PHD
Protein Properties Length: 854aa    MW: 97046 Da    PI: 4.4207
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00897.1_g00003.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox34.14.6e-11496540953
                              HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS
                 Homeobox   9 keqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 
                              +  +e L ++F +n  ps++ re+L+k+l+L+ ++V+ WF+N R+
  Rsa1.0_00897.1_g00003.1 496 RAAVEKLRQVFVENELPSKDVRERLSKELSLDPEKVSKWFKNARY 540
                              567899*************************************97 PP
2PHD41.82.5e-14226281151
                              SBTTTSS..TCTTSSEEEBS.SSSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS
                      PHD   1 rCkvCgk..sdeegelvlCd.gCkewfHlkClglkleseekpeg..ewlCeeCkek 51 
                              +C+ C++  +  +++++lCd +C+++fH+kCl+++le+e++p g   w+C+ C++k
  Rsa1.0_00897.1_g00003.1 226 FCAECNSreAFPDNDIILCDgTCNRAFHQKCLDPPLETESIPPGdqGWFCKFCDCK 281
                              6999***55455********56********************9999*******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579035.14E-14218283IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.102.5E-12222281IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS5001610.976224281IPR019787Zinc finger, PHD-finger
PfamPF006281.7E-11226281IPR019787Zinc finger, PHD-finger
SMARTSM002497.7E-10226279IPR001965Zinc finger, PHD-type
CDDcd155041.41E-31226278No hitNo description
PROSITE patternPS013590227278IPR019786Zinc finger, PHD-type, conserved site
Gene3DG3DSA:1.10.10.604.7E-12475539IPR009057Homeodomain-like
PROSITE profilePS5007112.973485545IPR001356Homeobox domain
SMARTSM003891.3E-11487549IPR001356Homeobox domain
SuperFamilySSF466897.7E-11487551IPR009057Homeodomain-like
CDDcd000862.72E-9488540No hitNo description
PfamPF000461.4E-8496540IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 854 aa     Download sequence    Send to blast
MASFCAYLGR IHPMWCMVKG KTLYDNDLLR GGGGYKSPVI VELDMKESET KACVSVEKAE  60
STLLSSLLKK GKGKETSNKK RKYNTKRKTE EEICSKPNKR KYSRGRNEEE KGKKTRKRKK  120
SKRQQKGEEE EEVDEALRLQ RRTRYLLIKM KMQQNLIDAY AAEGWKGQSR EKIRPDKELE  180
RAGKEILNCK LGLRDAVRQL DVLSSVGSME EKVMAPDGSI HHDHIFCAEC NSREAFPDND  240
IILCDGTCNR AFHQKCLDPP LETESIPPGD QGWFCKFCDC KIEIIDAMNA QIGTQISVDS  300
NWQDIFNEEA SRPNGSEATL NNEADWPSDD SEDGDYDPET KDIVRGSDSS GGEGGDNDGE  360
SISSSVSLAS DGVALSTESW EGHGFGNMVV ESGETCNEET VCGPRQRKTV DYTKLYHEMF  420
GKDAVLQEQG SEDEDWGPSD RRKRKKESDG ASTLVTMCEE NIKKDQDVKE IPEQNERDSV  480
SVEGKVGRRP MFRIPRAAVE KLRQVFVENE LPSKDVRERL SKELSLDPEK VSKWFKNARY  540
MALRNRKTES MKQPEDSNTF SGDARPEAVM EKNTATNEIQ ATVDETAKEE EYTETNEIED  600
TVDETAKEKN TETNEIQDTL DETAKEEEYT ETNEIEDTAD KTVMEENTET SEFHDTMDQT  660
PEEKNTETNE IQDTADETVM EKNTETKEMQ AADMENNSKT SEIHDTMDET NSEINEIQDT  720
MDETVPLGYD YACNDSQEET EHASVSFPTP TEDESQQYLE QKDSSFALVP QHEELSSGMS  780
LETPLEDKET ESKKELEAMM EMLCRADNKL VDVTQRLERF RTPKGRRKLG KSSSCLPEED  840
YVVYVPTAEI KEKR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
198119KRKYSRGRNEEEKGKKTRKRKK
2441445RKRKK
3441446RKRKKE
Functional Description ? help Back to Top
Source Description
UniProtSpecifically binds to the fungal elicitor-responsive DNA element, 5'-CTAATTGTTTA-3', of the gene PR2 promoter.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00897.1_g00003.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By pathogen infection.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018472029.10.0PREDICTED: pathogenesis-related homeodomain protein-like
SwissprotP487850.0PRH_ARATH; Pathogenesis-related homeodomain protein
TrEMBLA0A3P6CBT40.0A0A3P6CBT4_BRACM; Uncharacterized protein
STRINGBo1g014710.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM86992738
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29940.10.0pathogenesis related homeodomain protein A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]