PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_00886.1_g00014.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

G2-like

Protein Properties

Length: 369aa MW: 41510.9 Da PI: 6.2996

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_00886.1_g00014.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	97.7	8.6e-31	211	266	1	56
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W++eLH+rF++ ++qLGG+++AtPk+i+elmkv+gLt+++vkSHLQkYRl+ Rsa1.0_00886.1_g00014.1 211 KQRRCWSHELHRRFLKTLKQLGGPHVATPKQIRELMKVDGLTNDEVKSHLQKYRLH 266 79****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	14.592	208	268	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	7.2E-27	209	269	IPR009057	Homeodomain-like
SuperFamily	SSF46689	5.12E-17	209	268	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	4.1E-26	211	266	IPR006447	Myb domain, plants
Pfam	PF00249	9.1E-6	213	264	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 369 aa Download sequence Send to blast
MKREKCCEYI EALEEERRKI NVFQRELPLC LELVTQAIEA YKKEISGTTT DTLYGQPECS 60 EQTTGECGPV LDLFLPIKQS STSTDEEEEE EEVNEDDDVE HESHDTDIDF DDNNMKSEWL 120 KSVQLWNQPE AVPVNKSERS QQETQTVAEP IKENNNGTWS HQPPCYETSN EKNDYVISLA 180 TTSGGSGRKK TEAERGGSGG SGGSSGRGQR KQRRCWSHEL HRRFLKTLKQ LGGPHVATPK 240 QIRELMKVDG LTNDEVKSHL QKYRLHTRQP SQTIPNNRDS QTQHFVVVGG IWVPQASHPK 300 ANAVASRETT TGIYGPMVSQ LPSEWPSHSN FGREVSEKRS RCSNKGIVRC SSPAMSSSTR 360 TKTKDAKMS

Sequence ? help Back to Top

Protein Sequence Length: 369 aa Download sequence Send to blast

MKREKCCEYI EALEEERRKI NVFQRELPLC LELVTQAIEA YKKEISGTTT DTLYGQPECS  60
EQTTGECGPV LDLFLPIKQS STSTDEEEEE EEVNEDDDVE HESHDTDIDF DDNNMKSEWL  120
KSVQLWNQPE AVPVNKSERS QQETQTVAEP IKENNNGTWS HQPPCYETSN EKNDYVISLA  180
TTSGGSGRKK TEAERGGSGG SGGSSGRGQR KQRRCWSHEL HRRFLKTLKQ LGGPHVATPK  240
QIRELMKVDG LTNDEVKSHL QKYRLHTRQP SQTIPNNRDS QTQHFVVVGG IWVPQASHPK  300
ANAVASRETT TGIYGPMVSQ LPSEWPSHSN FGREVSEKRS RCSNKGIVRC SSPAMSSSTR  360
TKTKDAKMS

Functional Description ? help Back to Top
Source	Description
UniProt	Probable factor involved in nitrate and phosphate signaling in roots. Integrates nitrate and phosphate starvation responses and adaptation of root architecture, depending on nutrient availabilities. Acts downstream of the nitrate sensor and transporter NPF6.3/NRT1.1. Represses primary root development in response to phosphate deficiency conditions, only when nitrate is present. {ECO:0000269\|PubMed:25723764}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_00886.1_g00014.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by nitrate (PubMed:25723764). Down-regulated under nitrate deprivation conditions (PubMed:27419465). {ECO:0000269\|PubMed:25723764, ECO:0000269\|PubMed:27419465}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018481624.1	0.0	PREDICTED: myb family transcription factor EFM
Swissprot	Q9LS00	1e-168	HHO1_ARATH; Transcription factor HHO1
TrEMBL	A0A397Z3W7	0.0	A0A397Z3W7_BRACM; Uncharacterized protein
STRING	Bo7g082060.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13600	18	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G25790.1	1e-161	G2-like family protein

Publications ? help Back to Top
Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465]