PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00864.1_g00008.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 183aa    MW: 20338.7 Da    PI: 4.8433
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00864.1_g00008.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.61.4e-172271255
                      AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                              y+GVr +k +g+Wv+eIr+p +   + r++lg+f t+e+Aa a++ a+  ++g
  Rsa1.0_00864.1_g00008.1 22 AYRGVRKRK-WGKWVSEIREPGT---KNRIWLGSFETPEMAATAYDVAAFHFRG 71
                             69****999.**********833...59*********************99988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.63E-222180IPR016177DNA-binding domain
CDDcd000188.84E-332181No hitNo description
PROSITE profilePS5103223.632279IPR001471AP2/ERF domain
SMARTSM003801.7E-382285IPR001471AP2/ERF domain
PfamPF008475.3E-112271IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.0E-322280IPR001471AP2/ERF domain
PRINTSPR003678.0E-132334IPR001471AP2/ERF domain
PRINTSPR003678.0E-136181IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MSGYSNSTNN ERSDGQAGIP SAYRGVRKRK WGKWVSEIRE PGTKNRIWLG SFETPEMAAT  60
AYDVAAFHFR GREARLNFPE LVSSLPRPVD SSSDSIRMAA HEAALCLRTE PVESAMQVDT  120
TSSLNEGPTM VRLSPGEIQA INESTLGSPT MLMHSTYDSM GFANDVGMNV WDTYQMDYSL  180
WDL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-172384668ATERF1
3gcc_A1e-172384668ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00227DAPTransfer from AT1G71450Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00864.1_g00008.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018469514.11e-135PREDICTED: ethylene-responsive transcription factor ERF021-like
SwissprotQ9C9I21e-103ERF21_ARATH; Ethylene-responsive transcription factor ERF021
TrEMBLA0A398ABM61e-118A0A398ABM6_BRACM; Uncharacterized protein
STRINGBo2g072910.11e-119(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71450.11e-105ERF family protein