PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_00856.1_g00011.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | B3 | ||||||||
Protein Properties | Length: 260aa MW: 29913.7 Da PI: 6.2644 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 90.3 | 1.4e-28 | 93 | 187 | 1 | 86 |
EEEE-..-HHHHTT-EE--HHH.HTT.........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkeg 77 f k ltpsdv+k++rlv+pkk+a ++ g++ e ++++++d+ r+W+++++y+ +s+++v+t+GWk+Fvk+++Lke+ Rsa1.0_00856.1_g00011.1 93 FRKGLTPSDVGKLNRLVIPKKHAVKYlplieereeGEIVEDVVEVVFYDRGMRQWKFRYCYWTSSQSFVFTSGWKRFVKEKNLKER 178 7899**************************9999855666889******************************************* PP -EEEEEE-S CS B3 78 DfvvFkldg 86 D++vF++ + Rsa1.0_00856.1_g00011.1 179 DVIVFYRCE 187 ******432 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 8.7E-33 | 86 | 199 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.05E-27 | 91 | 187 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 7.25E-23 | 92 | 191 | No hit | No description |
SMART | SM01019 | 6.4E-21 | 93 | 194 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.0E-25 | 93 | 187 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.506 | 93 | 204 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence Send to blast |
MAYDSASLKL RSFDADSHRN FPLNAFTVYE PNFQKGYTTE AVLDMIKEGS YQDRFRDFLS 60 LPFHNVASGI NLVGSKQVRG GGGQDSNTWT ELFRKGLTPS DVGKLNRLVI PKKHAVKYLP 120 LIEEREEGEI VEDVVEVVFY DRGMRQWKFR YCYWTSSQSF VFTSGWKRFV KEKNLKERDV 180 IVFYRCELEG QSKNFLMIDV HCYSGDGSVV IDEEVNESHV HYTSEGEVKT GNDNSSKLKE 240 EETKSVENKA GFMLFGVKIQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wid_A | 1e-27 | 92 | 191 | 13 | 108 | DNA-binding protein RAV1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_00856.1_g00011.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189301 | 2e-62 | AC189301.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB030D08, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018465445.1 | 1e-161 | PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g51120-like | ||||
Swissprot | Q9C6P5 | 1e-112 | RAVL2_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g50680 | ||||
TrEMBL | A0A3P5ZAT1 | 1e-134 | A0A3P5ZAT1_BRACM; Uncharacterized protein | ||||
TrEMBL | M4ENV6 | 1e-134 | M4ENV6_BRARP; Uncharacterized protein | ||||
STRING | Bra030476.1-P | 1e-135 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1705 | 27 | 88 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G50680.1 | 1e-105 | RAV family protein |