PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00845.1_g00006.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family G2-like
Protein Properties Length: 328aa    MW: 37494.3 Da    PI: 6.3308
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00845.1_g00006.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.74.7e-322478155
                  G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                             kprl+Wt+eLH+rF+eav+qLGG++kAtPk ++++m+++gLtl+h+kSHLQkYRl
  Rsa1.0_00845.1_g00006.1 24 KPRLKWTCELHHRFIEAVNQLGGPNKATPKGLMKAMEIPGLTLYHLKSHLQKYRL 78
                             79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.2022181IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.8E-282278IPR009057Homeodomain-like
SuperFamilySSF466891.52E-152378IPR009057Homeodomain-like
TIGRFAMsTIGR015575.7E-222479IPR006447Myb domain, plants
PfamPF002492.9E-62677IPR001005SANT/Myb domain
PfamPF143791.5E-22126172IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MESNTNNDNN LKTKVSLVLS TDTKPRLKWT CELHHRFIEA VNQLGGPNKA TPKGLMKAME  60
IPGLTLYHLK SHLQKYRLGK SLKFDDNKLE VSSASETQEA ESKNDSRDFR GDANEENNDS  120
ANEGLKITEA LQLQMEVQKK LHEQIEVQRH LQVKIEAQGK YLQSVLMKAQ QTLAGYTSST  180
LGMEFARSEL FRLASMVNPS SSFSELTQME DYEEEGFLWC KKPENRGVGQ PRRSVESSLT  240
SSESSETKLN NNNDERKSME LPLMEIKSEV MMEKQKKRSL NDVLCVEHQP LKKRDFGVDD  300
DDEQHLRLSL NSYKKNMGTC PNIGLWFE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A4e-192480258Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B4e-192480258Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A4e-192480157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B4e-192480157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C4e-192480157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D4e-192480157Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A4e-192480258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C4e-192480258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D4e-192480258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F4e-192480258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H4e-192480258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J4e-192480258Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00845.1_g00006.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018451036.10.0PREDICTED: myb family transcription factor PHL8 isoform X1
SwissprotF4I2741e-166PHL8_ARATH; Myb family transcription factor PHL8
TrEMBLA0A078GTS70.0A0A078GTS7_BRANA; BnaC02g19330D protein
STRINGBo2g064200.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38782759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69580.11e-161G2-like family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]