PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00833.1_g00012.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family G2-like
Protein Properties Length: 401aa    MW: 45210.8 Da    PI: 7.003
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00833.1_g00012.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like107.48e-3446100155
                  G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                              kprl+Wtp+LHerF+eav+qLGG++kAtPkti+++m+++gLtl+h+kSHLQkYRl
  Rsa1.0_00833.1_g00012.1  46 KPRLKWTPDLHERFIEAVNQLGGADKATPKTIMKVMGIPGLTLYHLKSHLQKYRL 100
                              79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.22743103IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.3E-3144101IPR009057Homeodomain-like
SuperFamilySSF466894.84E-1745101IPR009057Homeodomain-like
TIGRFAMsTIGR015571.2E-2346101IPR006447Myb domain, plants
PfamPF002494.7E-104899IPR001005SANT/Myb domain
PfamPF143791.3E-25149194IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MYYQNQHQGK SILSSSRMHL ASERHPFLRG GNSPGDSGLI LSTDAKPRLK WTPDLHERFI  60
EAVNQLGGAD KATPKTIMKV MGIPGLTLYH LKSHLQKYRL SKNINGQANS GLNKIGMMTM  120
MEEKSPSDAD EIQSESLSIG PQPNKNSPIG EALQMQIEVQ RRLHEQLEVQ RHLQLRIEAQ  180
GKYLQSVLEK AQETLGRQNL SPAGIEAAKV QLSELVSKVS AEYPNTSFQL EPKEFQNLCT  240
QTTYPPDCSL QSCLTSSEGA QKNPKMLENN RLGLRTYIGD STSEQKEVME EPLFQRMELT  300
WTEGLRGNPY LSTSMVSGAE QRISYSERSP ATLTMGVGMH GHRGHQQGNV NEYKEERFTD  360
KSEEHKLETQ STKTELDLNT HVENYCTTRP KQFDLNGFSW N
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A1e-2146102157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B1e-2146102157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C1e-2146102157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D1e-2146102157Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that may activate the transcription of specific genes involved in nitrogen uptake or assimilation (PubMed:15592750). Acts redundantly with MYR1 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269|PubMed:21255164, ECO:0000305|PubMed:15592750}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00331DAPTransfer from AT3G04030Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00833.1_g00012.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by nitrogen deficiency. {ECO:0000269|PubMed:15592750}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ2220890.0HQ222089.1 Arabidopsis thaliana myb family transcription factor (MYR2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018432890.10.0PREDICTED: myb-related protein 2 isoform X1
SwissprotQ9SQQ90.0PHL9_ARATH; Myb-related protein 2
TrEMBLA0A397ZFW90.0A0A397ZFW9_BRACM; Uncharacterized protein
TrEMBLM4ET220.0M4ET22_BRARP; Uncharacterized protein
STRINGBra031952.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33362764
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04030.30.0G2-like family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Nakano Y,Naito Y,Nakano T,Ohtsuki N,Suzuki K
    NSR1/MYR2 is a negative regulator of ASN1 expression and its possible involvement in regulation of nitrogen reutilization in Arabidopsis.
    Plant Sci., 2017. 263: p. 219-225
    [PMID:28818378]