PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Rsa1.0_00832.1_g00007.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
|
||||||||
Family | NF-YC | ||||||||
Protein Properties | Length: 245aa MW: 27813.2 Da PI: 9.5112 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 44.1 | 4.6e-14 | 143 | 227 | 15 | 99 |
NF-YC 15 dfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprd 99 + k ++P++ri++i+++d+ +i +a l+ ka elfi ++ ++ + + k++ ++ ++++v++ + ++fl+d vp++ Rsa1.0_00832.1_g00007.1 143 EAKMIRFPMTRIRRIMRSDNSAPQIMQDAVFLVNKATELFIERFSEEAYGSSVKDKKKFIHYKHLSSVVSSKERYEFLTDCVPEK 227 567789****************************************************************************986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00808 | 2.5E-20 | 148 | 211 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 5.9E-23 | 149 | 226 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 2.01E-17 | 158 | 226 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 245 aa Download sequence Send to blast |
MVSSKKPKSD VVVVDKGNGL NNTRGSGSKT KNKKKTPNKA DLKDYVTPRW SGGGGGDFRR 60 NFGGRVRLRP SSDCGDSGGY GFVSTRGTRW WLCMHQIRND YVARKETEEE EVRDEISESS 120 SSSEEARRDE ETKERSNGVV SEEAKMIRFP MTRIRRIMRS DNSAPQIMQD AVFLVNKATE 180 LFIERFSEEA YGSSVKDKKK FIHYKHLSSV VSSKERYEFL TDCVPEKLKA EAALEEWERS 240 MADVG |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Rsa1.0_00832.1_g00007.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | KC797147 | 3e-36 | KC797147.1 Brassica napus transcription factor subunit NF-YC10B (NF-YC10B) gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_018480040.1 | 2e-88 | PREDICTED: DNA polymerase epsilon subunit C | ||||
TrEMBL | M4DQ75 | 2e-66 | M4DQ75_BRARP; Uncharacterized protein | ||||
STRING | Bra018668.1-P | 3e-67 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM11190 | 22 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G07980.1 | 3e-52 | nuclear factor Y, subunit C10 |