PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00831.1_g00010.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family G2-like
Protein Properties Length: 314aa    MW: 34310.3 Da    PI: 7.2767
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00831.1_g00010.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like102.23.3e-32114169156
                  G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                              k+r++W+p+LH+rFv+a++ LGGs++AtPk+i+elmkv+gLt+++vkSHLQkYRl+
  Rsa1.0_00831.1_g00010.1 114 KARRCWSPDLHRRFVQALQMLGGSQVATPKQIRELMKVDGLTNDEVKSHLQKYRLH 169
                              68****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.682111171IPR017930Myb domain
SuperFamilySSF466891.55E-17112172IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-28112172IPR009057Homeodomain-like
TIGRFAMsTIGR015576.6E-27114169IPR006447Myb domain, plants
PfamPF002492.3E-7116167IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MTTAQLWSQP ETKPKNNDSS TDTPKDELAS SPKLGHVDAK QRNGGGAFHP FTKEQHLPEL  60
ALSTEVKRFS PTIEHTNDHG NDESMINSGN NKNNNNNNSN SNGISSTTSQ SNRKARRCWS  120
PDLHRRFVQA LQMLGGSQVA TPKQIRELMK VDGLTNDEVK SHLQKYRLHT RRPSPSPQTS  180
GGQGPHLVVL GGIWVPPEYT TAHGGTPTLY HHQVHHHHGN AATQPPQHFC SSQEFYTTPP  240
TPQPLHHQHF QTFNGSSGGG ATSNDSAHHQ LTDSATDEGR SLESASGEGK GLAALREEGE  300
DQSNINGSEI TLKF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A3e-14114167154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B3e-14114167154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C3e-14114167154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D3e-14114167154Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor acting as a flowering repressor, directly repressing FT expression in a dosage-dependent manner in the leaf vasculature. {ECO:0000269|PubMed:25132385}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00831.1_g00010.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by SVP. Down-regulated by high temperature and gibberellic acid treatment. Not regulated by photoperiod, circadian rhythm under long days or vernalization. {ECO:0000269|PubMed:25132385}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018478326.10.0PREDICTED: myb family transcription factor EFM
SwissprotQ9ZQ851e-162EFM_ARATH; Myb family transcription factor EFM
TrEMBLA0A397Z3C00.0A0A397Z3C0_BRACM; Uncharacterized protein
STRINGBra025115.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM71342843
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03500.11e-150G2-like family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]