PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_00828.1_g00008.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | ERF | ||||||||
Protein Properties | Length: 348aa MW: 39212.1 Da PI: 4.2983 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.1 | 1.3e-19 | 126 | 175 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +++GVr+++ +g+W+AeIrdp + ++r +lg+f taeeAa +++a+ +l+g Rsa1.0_00828.1_g00008.1 126 KFRGVRQRP-WGKWAAEIRDPEQ---KRRLWLGTFETAEEAALVYDNAAIRLRG 175 89*******.**********732...5*************************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 1.7E-30 | 125 | 183 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.61E-34 | 126 | 182 | No hit | No description |
SuperFamily | SSF54171 | 1.7E-21 | 126 | 184 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 6.9E-13 | 126 | 175 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.868 | 126 | 183 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.6E-40 | 126 | 189 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.1E-10 | 127 | 138 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.1E-10 | 149 | 165 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 348 aa Download sequence Send to blast |
MDELQEYMDF RPLKYSEHKT SVTKYTKTSP ETRPDSVKIV RVSVTDPYAT DSSSDEDEQE 60 QEDFLFPRRR VRRFVNEIRV EPGRSDTDVA GGVSTKERKR LSSPALASNR RRALKVSTTS 120 GQNGRKFRGV RQRPWGKWAA EIRDPEQKRR LWLGTFETAE EAALVYDNAA IRLRGPDALT 180 NFSVPPEESE PEQSVIVKPE SNITTTTTSC SESTEDFQHV SSPTSVLNLQ SSEEIQQPFK 240 SAKPEPEISD AVWWHTGVSS GSGESDDSFM LDSSFLDNYF NESLPEFSML DQPMGEVFLE 300 NDIFGDAFLD GESMMNIGDD EFTTSSIKDI GSVFSEFDDS LISDLLVV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 7e-22 | 124 | 182 | 3 | 62 | ATERF1 |
3gcc_A | 7e-22 | 124 | 182 | 3 | 62 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_00828.1_g00008.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018474690.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor CRF3-like | ||||
Swissprot | Q9FK12 | 1e-130 | CRF3_ARATH; Ethylene-responsive transcription factor CRF3 | ||||
TrEMBL | A0A3N6RE22 | 1e-176 | A0A3N6RE22_BRACR; Uncharacterized protein | ||||
STRING | Bo3g022760.1 | 1e-175 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2229 | 25 | 76 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G53290.1 | 1e-100 | cytokinin response factor 3 |
Publications ? help Back to Top | |||
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