PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_00802.1_g00014.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 338aa MW: 38894.4 Da PI: 5.4341 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 60.2 | 2.6e-19 | 15 | 61 | 4 | 50 |
-SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 +++s + +++ R+ +i+KKA+EL +LCd+e++vi ++++g+l++++ Rsa1.0_00802.1_g00014.1 15 SSYSLAATSLKSRLLTIFKKAQELTTLCDIEACVIHYGPEGELRTWP 61 78999*****************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 9.124 | 22 | 64 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.96E-13 | 24 | 96 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 7.5E-10 | 26 | 60 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 338 aa Download sequence Send to blast |
MRPPLSSSCS NSSPSSYSLA ATSLKSRLLT IFKKAQELTT LCDIEACVIH YGPEGELRTW 60 PENRDKVRDL ALRYIQLDEA KRRKKSLNLY EFLNKNKKTT MTTNNFKKRA QKKNVEEELK 120 YPISDHYSVD QINQLIHSLE LSYSTLQERR RFLPAKKQSE SLNPNQFTPL PRESVLKNQE 180 FCVYDQKNNN SFQHLCVSAA QESGLHYQFM PYGGYYDQNM FVGNNYQDPC VSSNTQDYSV 240 FPLELQESVS NYELNQLMQH ELYGLDQNMC LGDTTNSNVL DPCLSDDFCF DFQNIYGGNL 300 VGNPSFSQDF NIDMSSSYVD ENRLLQASTL PSLYLQSS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305|PubMed:26462908}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_00802.1_g00014.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018479640.1 | 0.0 | PREDICTED: agamous-like MADS-box protein AGL75 | ||||
Swissprot | Q9FLL0 | 4e-63 | AGL75_ARATH; Agamous-like MADS-box protein AGL75 | ||||
TrEMBL | A0A078I552 | 1e-169 | A0A078I552_BRANA; BnaA04g09910D protein | ||||
STRING | Bra025609.1-P | 1e-166 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM566 | 20 | 126 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G41200.1 | 4e-62 | AGAMOUS-like 75 |
Publications ? help Back to Top | |||
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