PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00802.1_g00013.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family HSF
Protein Properties Length: 140aa    MW: 16397.2 Da    PI: 10.8124
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00802.1_g00013.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind41.73e-131093289
                             HHHHHHHHHCTGGGTTTSEES.SSSSEEEES-HHHHHHHTHHH..HSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXX CS
             HSF_DNA-bind  2 Flkklyeiledeelkelisws.engnsfvvldeeefakkvLpk..yFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksF 86
                             F  +ly+i+ed++ +++isws +n+nsf+v+d +++ +++L k      +n+  F+ +L   gFk v +  ++        eF+h+ F
  Rsa1.0_00802.1_g00013.1 10 FYLQLYQIVEDRSSDQIISWSkTNNNSFIVWDLKRLRSDILLKfsSVLGRNLPEFLAKLRSHGFKPVFKGPGE-------LEFEHDDF 90
                             8899*****************9999****************982234579*****************999998.......9******9 PP

                             XXX CS
             HSF_DNA-bind 87 kkg 89
                              ++
  Rsa1.0_00802.1_g00013.1 91 ARS 93
                             885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.3E-14593IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.0E-96102IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.07E-11793IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004472.0E-101094IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.4E-51033IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.4E-56476IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 140 aa     Download sequence    Send to blast
MIRKLSTSSF YLQLYQIVED RSSDQIISWS KTNNNSFIVW DLKRLRSDIL LKFSSVLGRN  60
LPEFLAKLRS HGFKPVFKGP GELEFEHDDF ARSPLMKKMM AKALSDRIER FDAQIKTLKC  120
RLKAKKASIK VENLFQNLRI
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00802.1_g00013.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018479638.12e-96PREDICTED: heat stress transcription factor A-4a-like
TrEMBLM4EA286e-85M4EA28_BRARP; Uncharacterized protein
STRINGBra025635.1-P9e-86(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38391457
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77570.15e-26Winged helix-turn-helix transcription repressor DNA-binding