PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_00783.1_g00007.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | MYB_related | ||||||||
Protein Properties | Length: 185aa MW: 21031.1 Da PI: 9.487 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 46.5 | 8.5e-15 | 30 | 75 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ + +E +ll +++k+lG++ W++Ia +++ gRt +++k++w++y+ Rsa1.0_00783.1_g00007.1 30 RGKLSSDEVDLLSRLHKLLGNR-WSLIAGRLP-GRTTNDIKNYWNTYM 75 78999*****************.*********.*************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 4.252 | 1 | 24 | IPR017877 | Myb-like domain |
SuperFamily | SSF46689 | 1.38E-18 | 6 | 79 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.7E-5 | 8 | 23 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.6E-21 | 24 | 78 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 22.676 | 25 | 79 | IPR017930 | Myb domain |
SMART | SM00717 | 1.2E-12 | 29 | 77 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.9E-13 | 30 | 74 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.35E-10 | 34 | 75 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 185 aa Download sequence Send to blast |
MSIFGFVGLN RCRKSCRLRW LNYLKPSIKR GKLSSDEVDL LSRLHKLLGN RWSLIAGRLP 60 GRTTNDIKNY WNTYMSKKPD PFCKTEMKEQ NPTGSETTPA QKFDVIKPQP RSFFNNNSLS 120 HVNGLPEVDI DDGITCNKAD EKYEHVENVM DAKSMWWENL LVEVGGVGAV DPAAMGTVLT 180 RQVLR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-16 | 11 | 80 | 40 | 109 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_00783.1_g00007.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018461613.1 | 1e-131 | PREDICTED: transcription factor MYB114-like | ||||
Swissprot | Q9FNV9 | 6e-66 | MY113_ARATH; Transcription factor MYB113 | ||||
TrEMBL | E5D8F5 | 7e-77 | E5D8F5_BRAOB; MYB2 | ||||
STRING | Bo6g100940.1 | 1e-76 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66370.1 | 2e-68 | myb domain protein 113 |
Publications ? help Back to Top | |||
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