PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00769.1_g00006.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family RAV
Protein Properties Length: 336aa    MW: 38197.2 Da    PI: 8.6253
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00769.1_g00006.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP233.88.5e-113987155
                      AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                             ++ykGV   + +g W A+I+       ++r++lg+f ta eAa+ ++ a  k++g
  Rsa1.0_00769.1_g00006.1 39 TRYKGVVLQP-NGNWGAQIYTE-----HRRIWLGTFKTAAEAAASYDSACIKIRG 87
                             68********.8******9994.....5*********************999887 PP
2B386.72e-27173273186
                              EEEE-..-HHHHTT-EE--HHH.HTT........---............--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHH CS
                       B3   1 ffkvltpsdvlksgrlvlpkkfaeeh........ggkke..........esktltledesgrsWevkliyrkksgryvltkGWkeF 68 
                              f k+ltpsdv+k++rlv+pkk+a +h        +   e           +++++++d+  r+W+++++y+++s+++v+t+GW++F
  Rsa1.0_00769.1_g00006.1 173 FSKELTPSDVGKLNRLVIPKKHAVKHlpfisgdqK---EreegetggalDDVEVVFYDRAMRQWKFRYCYWRSSQSFVFTRGWNGF 255
                              889***************************97651...33456666777899********************************** PP

                              HHHHT--TT-EEEEEE-S CS
                       B3  69 vkangLkegDfvvFkldg 86 
                              v++++Lke+D ++F++ +
  Rsa1.0_00769.1_g00006.1 256 VREKRLKEKDAIIFYHCD 273
                              ***************754 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008477.3E-73987IPR001471AP2/ERF domain
CDDcd000185.63E-213998No hitNo description
SuperFamilySSF541717.85E-134097IPR016177DNA-binding domain
PROSITE profilePS5103217.2664097IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.0E-164097IPR001471AP2/ERF domain
SMARTSM003808.7E-1640105IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.104.9E-31165271IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-26171273IPR015300DNA-binding pseudobarrel domain
CDDcd100174.96E-26172271No hitNo description
PROSITE profilePS5086311.392173286IPR003340B3 DNA binding domain
SMARTSM010191.9E-21173287IPR003340B3 DNA binding domain
PfamPF023621.2E-24173273IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MNSLNEAKTT AETSGSSDYG LCLAKPMEQP HVSNTATTTR YKGVVLQPNG NWGAQIYTEH  60
RRIWLGTFKT AAEAAASYDS ACIKIRGIDA NSHRNFPWCE ITTHEPEFQA SYTTEAVLNM  120
IKDCSYQHKF REYLRRRSQM VDFANINIVA AAASKQSRGG RGVQEPFSCT QLFSKELTPS  180
DVGKLNRLVI PKKHAVKHLP FISGDQKERE EGETGGALDD VEVVFYDRAM RQWKFRYCYW  240
RSSQSFVFTR GWNGFVREKR LKEKDAIIFY HCDVPTSVKT LQGQSNSFLM IDVDYFTDKG  300
SVAPKEVDKM VHNASEEEMK TETKPGGFML FGVRIQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A1e-2317226913100DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00769.1_g00006.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018489248.10.0PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g51120
SwissprotQ9C6881e-163RAVL3_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g51120
TrEMBLM4DQV10.0M4DQV1_BRARP; Uncharacterized protein
STRINGBra018894.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17052788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51120.11e-162RAV family protein