PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_00762.1_g00006.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | HSF | ||||||||
Protein Properties | Length: 340aa MW: 39092.7 Da PI: 6.1334 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 108.9 | 3.7e-34 | 14 | 105 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFk 87 Fl+k+ye+++d++ +++isws++++sf+v+++ ef+k++Lp++Fkh+nf+SF+RQLn+YgF+k++ e+ weF+++ F Rsa1.0_00762.1_g00006.1 14 FLTKTYEMVDDSSSDSVISWSDHNKSFIVKNPAEFSKDLLPRFFKHKNFSSFIRQLNTYGFRKIDPEK---------WEFANEDFV 90 9****************************************************************999.........********* PP XXXXXXXXXXXXXXX CS HSF_DNA-bind 88 kgkkellekikrkks 102 +g+ l+++i+r+k Rsa1.0_00762.1_g00006.1 91 RGQPYLMKNIHRRKP 105 ************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46785 | 2.31E-34 | 9 | 103 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 2.8E-59 | 10 | 103 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene3D | G3DSA:1.10.10.10 | 2.0E-37 | 11 | 103 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 2.0E-30 | 14 | 103 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 9.2E-19 | 14 | 37 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 9.2E-19 | 52 | 64 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 53 | 77 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 9.2E-19 | 65 | 77 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009408 | Biological Process | response to heat | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009958 | Biological Process | positive gravitropism | ||||
GO:0048527 | Biological Process | lateral root development | ||||
GO:0048530 | Biological Process | fruit morphogenesis | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 340 aa Download sequence Send to blast |
MDENNGVSSS LPPFLTKTYE MVDDSSSDSV ISWSDHNKSF IVKNPAEFSK DLLPRFFKHK 60 NFSSFIRQLN TYGFRKIDPE KWEFANEDFV RGQPYLMKNI HRRKPVHSHS LQNLQAQSPL 120 SDSERQSMKD QIERLKREKE VLLADLQSQE LERKGFELQV TALKDRLQHM EQRQRSIVTF 180 VSQVLEKPGI SLNLETHERR KRKLQETTSS LLPSRSHAEQ VEKLESSLTF LENLAMESCD 240 KSMDIDVNES TSFAESLSNG DNRPKSAKID MNAEPVTTIA AAPKTGVNDV FWEQCLTENP 300 GSIEQQEVQS ERRDVDANKI GGGRTFWWNA KNVNDIAERV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 1e-22 | 9 | 103 | 24 | 129 | Heat shock factor protein 1 |
5d5v_B | 1e-22 | 9 | 103 | 24 | 129 | Heat shock factor protein 1 |
5d5v_D | 1e-22 | 9 | 103 | 24 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 197 | 203 | ERRKRKL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). May be involved in general response to auxin. {ECO:0000269|PubMed:18381353}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_00762.1_g00006.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By heat and cold stresses and the herbicide 2,4-dichlorophenoxyacetic acid (2,4-D, auxin analog). {ECO:0000269|PubMed:18381353}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018452172.1 | 0.0 | PREDICTED: heat stress transcription factor A-4c | ||||
Refseq | XP_018452173.1 | 0.0 | PREDICTED: heat stress transcription factor A-4c | ||||
Swissprot | Q9FK72 | 0.0 | HFA4C_ARATH; Heat stress transcription factor A-4c | ||||
TrEMBL | A0A397XX63 | 0.0 | A0A397XX63_BRACM; Uncharacterized protein | ||||
TrEMBL | M4DM63 | 0.0 | M4DM63_BRARP; Uncharacterized protein | ||||
STRING | Bra017595.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2853 | 28 | 68 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G45710.1 | 0.0 | HSF family protein |
Publications ? help Back to Top | |||
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