PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_00737.1_g00005.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | Whirly | ||||||||
Protein Properties | Length: 172aa MW: 18938.6 Da PI: 10.1059 | ||||||||
Description | Whirly family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Whirly | 129.1 | 2.4e-40 | 86 | 170 | 1 | 85 |
Whirly 1 svyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgs 85 s+yk+kaal++++++p+f++l+sg++kl+++G+lll++a+a+++r+ydW++kq+f+ls+te+++lv+l+++esceffhdp ++++ Rsa1.0_00737.1_g00005.1 86 SIYKGKAALTIEPRAPEFVSLQSGAFKLSKEGFLLLQFAPAAGVRQYDWSRKQVFSLSVTEIGNLVSLGPRESCEFFHDPNKGKG 170 7*******************************************************************************99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.30.31.10 | 4.4E-43 | 75 | 169 | IPR009044 | ssDNA-binding transcriptional regulator |
SuperFamily | SSF54447 | 5.49E-38 | 78 | 169 | IPR009044 | ssDNA-binding transcriptional regulator |
Pfam | PF08536 | 2.0E-36 | 87 | 170 | IPR013742 | Plant transcription factor |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 172 aa Download sequence Send to blast |
MSQLLSSPPM AVNSRTFLTH RFPEARFLTA GGFVGKGHCF AVKVKPMEER VKLTLKSRYS 60 DSSSPPYSPP QNGEGGSSPR FYVGHSIYKG KAALTIEPRA PEFVSLQSGA FKLSKEGFLL 120 LQFAPAAGVR QYDWSRKQVF SLSVTEIGNL VSLGPRESCE FFHDPNKGKG YD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4koq_A | 9e-61 | 77 | 170 | 5 | 98 | Single-stranded DNA-binding protein WHY3, chloroplastic |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Single-stranded DNA-binding protein that functions in both chloroplasts and nucleus. In chloroplasts, maintains plastid genome stability by preventing break-induced and short homology-dependent illegitimate recombinations. In the nucleus, is recruited to a distal element upstream of the kinesin KP1 to mediate the transcriptional repression of KP1. Can bind double-stranded DNA in vivo. {ECO:0000269|PubMed:19666500, ECO:0000269|PubMed:19669906, ECO:0000269|PubMed:20551348, ECO:0000269|PubMed:21911368}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_00737.1_g00005.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:19669906}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018483253.1 | 1e-121 | PREDICTED: single-stranded DNA-binding protein WHY3, chloroplastic isoform X1 | ||||
Swissprot | Q66GR6 | 8e-81 | WHY3_ARATH; Single-stranded DNA-binding protein WHY3, chloroplastic | ||||
TrEMBL | A0A3P6EY56 | 6e-99 | A0A3P6EY56_BRAOL; Uncharacterized protein | ||||
STRING | Bo7g080560.1 | 1e-98 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5023 | 27 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02740.1 | 4e-80 | ssDNA-binding transcriptional regulator |
Publications ? help Back to Top | |||
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