PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_00734.1_g00001.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

Protein Properties

Length: 127aa MW: 14674.3 Da PI: 4.2553

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_00734.1_g00001.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	49.1	1e-15	11	99	2	98
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 +k +++ + + l +p e++ + + t+ l d gr W+v+ ++++++++lt GW++Fvk+n+L++g ++ F +d +++ Rsa1.0_00734.1_g00001.1 11 IKPFIS--HKSAESLEIPLGLNEHFPDP--LPNTVDLLDYCGRCWTVRT--KRRGESVFLTVGWENFVKDNELEDGKMMNFIYDCNRT 92 555533..33334478888877555544..888**************..******************************98777 PP E..EEEEE- CS B3 90 felvvkvfr 98 f +v +f Rsa1.0_00734.1_g00001.1 93 F--HVIIFG 99 7..888876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	2.4E-20	5	101	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	12.506	8	101	IPR003340	B3 DNA binding domain
SuperFamily	SSF101936	1.96E-20	10	100	IPR015300	DNA-binding pseudobarrel domain
SMART	SM01019	1.3E-14	10	101	IPR003340	B3 DNA binding domain
Pfam	PF02362	4.2E-13	12	98	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 127 aa Download sequence Send to blast
MAATDEDQGF IKPFISHKSA ESLEIPLGLN EHFPDPLPNT VDLLDYCGRC WTVRTKRRGE 60 SVFLTVGWEN FVKDNELEDG KMMNFIYDCN RTFHVIIFGH DSVSEHRDFP RAVVDVSDYE 120 TGEEEEE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1yel_A	2e-49	1	101	3	102	At1g16640
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_00734.1_g00001.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009149100.1	3e-69	PREDICTED: B3 domain-containing protein At1g16640
Swissprot	Q9FX77	1e-55	Y1664_ARATH; B3 domain-containing protein At1g16640
TrEMBL	A0A397YYT1	7e-68	A0A397YYT1_BRACM; Uncharacterized protein
STRING	Bo5g022070.1	1e-67	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15751	14	16

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G16640.1	4e-58	B3 family protein

Publications ? help Back to Top
Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]