PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00731.1_g00009.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 211aa    MW: 23320.9 Da    PI: 9.8231
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00731.1_g00009.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.44.2e-192171155
                      AP2  1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                             ++++GVr ++ +gr++AeIrd ++    ++r++lg+f++a +Aa+a++aa+++l+g
  Rsa1.0_00731.1_g00009.1 21 TRFRGVRKRP-WGRYAAEIRDpFK----KARVWLGTFDSAVDAARAYDAAARNLRG 71
                             589*******.**********662....5*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.0E-122171IPR001471AP2/ERF domain
CDDcd000186.89E-192181No hitNo description
SMARTSM003801.1E-352285IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-302279IPR001471AP2/ERF domain
SuperFamilySSF541712.16E-212280IPR016177DNA-binding domain
PROSITE profilePS5103222.6552279IPR001471AP2/ERF domain
PRINTSPR003672.7E-92334IPR001471AP2/ERF domain
PRINTSPR003672.7E-94561IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MRRGRVSTPV IANHNASIKE TRFRGVRKRP WGRYAAEIRD PFKKARVWLG TFDSAVDAAR  60
AYDAAARNLR GPKAKTNFPI DSSPPSHQQN HNQIDPFMDH RLYAGVSSRP TSSSMSSTVE  120
SSSGQRSSVA KPMSTTTTTA KRYPRTPPVV PEDCHSDCGS SSSVIDDDGE DDIASSTRRR  180
NPPFRFDLNF PPLDDVGLIN GVDDLCTDLR L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-1922861479Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional repressor. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways and could also regulate other AtERFs. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:11487705, ECO:0000269|PubMed:9756931}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00731.1_g00009.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by jasmonate (JA), ethylene and Alternaria brassicicola (locally and systemically). Moderate induction by wounding or drought stress does not require EIN2, whereas induction by NaCl does. Transcripts accumulate slightly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by ethylene, exogenous abscisic acid (ABA), cold and heat stress. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:12805630}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018459878.11e-154PREDICTED: ethylene-responsive transcription factor 3-like
SwissprotO803392e-72ERF82_ARATH; Ethylene-responsive transcription factor 3
TrEMBLA0A078HJT81e-104A0A078HJT8_BRANA; BnaC06g03860D protein
TrEMBLA0A0D3CPT71e-104A0A0D3CPT7_BRAOL; Uncharacterized protein
STRINGBo6g022410.11e-105(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50640.17e-57ethylene responsive element binding factor 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]