PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00731.1_g00002.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family RAV
Protein Properties Length: 344aa    MW: 39384.2 Da    PI: 7.1666
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00731.1_g00002.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP230.21.1e-095399254
                      AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54
                             +ykGV +   +g W A+I+       ++r++lg+f +a eAa+a++ a  k++
  Rsa1.0_00731.1_g00002.1 53 KYKGVVQQQ-NGHWGAQIYAD-----HRRIWLGTFRSAAEAAAAYDSASIKIR 99
                             8****9888.8******9993.....4********************998877 PP
2B387.21.4e-27179278187
                              EEEE-..-HHHHTT-EE--HHH.HTT..............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHH CS
                       B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkan 72 
                              f k+ltpsdv+k++rlv+pkk+a ++              g    e+++++++d+  r+W+++++y+++s+++vlt+GW +Fvk++
  Rsa1.0_00731.1_g00002.1 179 FRKELTPSDVGKLNRLVIPKKYAVKYlpfirddrddereeG-GIGEDVEVVFYDRAMRQWKFRYCYWRSSQSFVLTRGWIGFVKEK 263
                              89******************************998877743.33599*************************************** PP

                              T--TT-EEEEEE-SS CS
                       B3  73 gLkegDfvvFkldgr 87 
                               L+e+D++vF+  ++
  Rsa1.0_00731.1_g00002.1 264 SLQEKDVIVFYTCKT 278
                              **********95554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.4E-1653116IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.1E-1653110IPR001471AP2/ERF domain
SuperFamilySSF541713.53E-1353111IPR016177DNA-binding domain
PROSITE profilePS5103216.77953110IPR001471AP2/ERF domain
CDDcd000185.95E-1153112No hitNo description
Gene3DG3DSA:2.40.330.107.2E-32170300IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.2E-26177277IPR015300DNA-binding pseudobarrel domain
CDDcd100171.30E-25178274No hitNo description
PROSITE profilePS5086312.252179296IPR003340B3 DNA binding domain
SMARTSM010191.1E-18179286IPR003340B3 DNA binding domain
PfamPF023621.0E-24179278IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MSELLSIMNT EDAKTEETSS ITNGGFLPFK KRMSHLNNPP NSALEVALPG KVKYKGVVQQ  60
QNGHWGAQIY ADHRRIWLGT FRSAAEAAAA YDSASIKIRT YDANTHRNFP WSEYTIHEPA  120
FQNEHTTEAV LSMIKDGTYQ RRYSEFSKKI QSKIAKRCNV VGSKEDQESS KRFSCTELFR  180
KELTPSDVGK LNRLVIPKKY AVKYLPFIRD DRDDEREEGG IGEDVEVVFY DRAMRQWKFR  240
YCYWRSSQSF VLTRGWIGFV KEKSLQEKDV IVFYTCKTLE GGQSKNFLMI DVHCSSDDGS  300
AVSDEEVNET VRNSSEGEVK TEGEEETKSV ENKGGFMLFG VRIQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A6e-231772886108B3 domain-containing transcription factor NGA1
5os9_B6e-231772886108B3 domain-containing transcription factor NGA1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00731.1_g00002.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018487669.10.0PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g51120-like
RefseqXP_018487676.10.0PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g51120-like
SwissprotQ9C6P51e-147RAVL2_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g50680
TrEMBLA0A078HID10.0A0A078HID1_BRANA; BnaC06g03900D protein
STRINGBo6g022450.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17052788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50680.11e-123RAV family protein