PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00728.1_g00009.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 207aa    MW: 23695.7 Da    PI: 4.3196
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00728.1_g00009.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2605.4e-19556156
                      AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                             ++y+GVr +k +g+WvAeIr p++   r r++lg+f++ae+Aa+a +aa  +l+g+
  Rsa1.0_00728.1_g00009.1  5 PKYTGVRKRK-WGKWVAEIRLPNS---RERIWLGSFDSAEKAARAFDAALYCLRGA 56
                             79*****999.**********933...5*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.2E-11555IPR001471AP2/ERF domain
CDDcd000181.38E-27565No hitNo description
SMARTSM003801.0E-29669IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.7E-29664IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-20664IPR016177DNA-binding domain
PROSITE profilePS5103221.667663IPR001471AP2/ERF domain
PRINTSPR003672.5E-9718IPR001471AP2/ERF domain
PRINTSPR003672.5E-92945IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MDASPKYTGV RKRKWGKWVA EIRLPNSRER IWLGSFDSAE KAARAFDAAL YCLRGAGARF  60
NFPDNPPDIP GGRSMTPQEI QVAANRFAKE ELLPPHQQRP TSQRGDKSSE EVTEISAREE  120
ISGGPTLGEV GEYNNYNNEN NSNGTDTSTY WPSLWEENFG MSEEFDTFYM EDSSQQQEHE  180
LSSDFYYDGA YVVEDDFSHY NINLWNF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A6e-166631472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00728.1_g00009.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018474848.11e-131PREDICTED: ethylene-responsive transcription factor ERF016-like
SwissprotQ9C5919e-97ERF16_ARATH; Ethylene-responsive transcription factor ERF016
TrEMBLA0A397ZTG31e-110A0A397ZTG3_BRACM; Uncharacterized protein
TrEMBLM4CQV81e-110M4CQV8_BRARP; Uncharacterized protein
STRINGBra006599.1-P1e-111(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM141671424
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G21960.12e-94ERF family protein