PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00727.1_g00012.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C2H2
Protein Properties Length: 235aa    MW: 26415.3 Da    PI: 7.5671
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00727.1_g00012.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.10.0006180102123
                              EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                              + C+ C k Fs++  L  H++ H
  Rsa1.0_00727.1_g00012.1  80 FGCTFCEKEFSTSQALGGHQNAH 102
                              56******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.39E-677108No hitNo description
Gene3DG3DSA:3.30.160.603.3E-577106IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.44880107IPR007087Zinc finger, C2H2
PROSITE patternPS00028082102IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MELNLTTSCS SSSISSSSHE VGFSTDTKGN MREKIAVGPA SETPRLEFSF LFNRDSIRNS  60
GYGVLDEAEE MKNEAKARVF GCTFCEKEFS TSQALGGHQN AHKQERSMAK RRKVKEMNYP  120
GLSFYSQYPP SGDLFSSSNS SQYGLGVHYN PNIGKSKAYP FNIFRRRLGY REHNVNSHIP  180
LLSHLSCQNT DVFSRNLISN LEGTIHMNKE EQGQKQEQAE TDTCKDTEID LSLKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00727.1_g00012.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893620.0AC189362.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB045I17, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018475559.11e-176PREDICTED: zinc finger protein 1-like
TrEMBLA0A0D3AZ871e-135A0A0D3AZ87_BRAOL; Uncharacterized protein
TrEMBLA0A3P5ZX791e-135A0A3P5ZX79_BRAOL; Uncharacterized protein
STRINGBo3g001220.11e-136(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM87382636
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01860.14e-68C2H2 family protein