PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_00713.1_g00008.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | NF-YB | ||||||||
Protein Properties | Length: 209aa MW: 23817.2 Da PI: 6.0876 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 181.1 | 9.5e-57 | 34 | 129 | 2 | 97 |
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvyl 87 +eqdrflPianv+rimkkvlP+n+kiskdaketvqecvsefisfvt+easdkcqrekrktingdd++wa++tlGfedyv+plkvyl Rsa1.0_00713.1_g00008.1 34 KEQDRFLPIANVGRIMKKVLPGNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDIIWAITTLGFEDYVAPLKVYL 119 89************************************************************************************ PP NF-YB 88 kkyrelegek 97 +kyre+egek Rsa1.0_00713.1_g00008.1 120 NKYRETEGEK 129 *******997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 7.9E-55 | 27 | 153 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 1.42E-41 | 36 | 151 | IPR009072 | Histone-fold |
Pfam | PF00808 | 3.9E-28 | 39 | 103 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 2.9E-19 | 67 | 85 | No hit | No description |
PROSITE pattern | PS00685 | 0 | 70 | 86 | IPR003956 | Transcription factor, NFYB/HAP3, conserved site |
PRINTS | PR00615 | 2.9E-19 | 86 | 104 | No hit | No description |
PRINTS | PR00615 | 2.9E-19 | 105 | 123 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 209 aa Download sequence Send to blast |
MTEESPEEDH ESPGVAETNL GSPSSKNNNN SNNKEQDRFL PIANVGRIMK KVLPGNGKIS 60 KDAKETVQEC VSEFISFVTG EASDKCQREK RKTINGDDII WAITTLGFED YVAPLKVYLN 120 KYRETEGEKA NSPKQRQQQV QQNNHFQFQE QDHNNMSCTS YISHHHPSPF FPADHQPFPN 180 LPFSPKSLQK QFPQQQQHDN TDSIGQWSV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4g91_B | 2e-45 | 34 | 124 | 2 | 92 | Transcription factor HapC (Eurofung) |
4g92_B | 2e-45 | 34 | 124 | 2 | 92 | Transcription factor HapC (Eurofung) |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_00713.1_g00008.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC787668 | 0.0 | KC787668.1 Brassica napus transcription factor subunit NF-YB7A (NF-YB7A) gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018491586.1 | 1e-156 | PREDICTED: nuclear transcription factor Y subunit B-7-like | ||||
Swissprot | Q9SIT9 | 1e-115 | NFYB7_ARATH; Nuclear transcription factor Y subunit B-7 | ||||
TrEMBL | A0A3P5ZP76 | 1e-134 | A0A3P5ZP76_BRACM; Uncharacterized protein | ||||
TrEMBL | M4D9I3 | 1e-134 | M4D9I3_BRARP; Uncharacterized protein | ||||
STRING | Bra013143.1-P | 1e-135 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM255 | 28 | 229 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G13570.1 | 2e-99 | nuclear factor Y, subunit B7 |
Publications ? help Back to Top | |||
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