PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_00707.1_g00013.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | MYB | ||||||||
Protein Properties | Length: 292aa MW: 33136.3 Da PI: 7.4363 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 49.5 | 9.8e-16 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 rg+W++eEd +l+d++++ G+g +W + +++ g++R++k+c++rw++yl Rsa1.0_00707.1_g00013.1 14 RGPWSPEEDAKLKDYIEKQGTGgNWIALPHKAGLRRCGKSCRLRWLNYL 62 89*********************************************97 PP | |||||||
2 | Myb_DNA-binding | 40.7 | 5.5e-13 | 69 | 111 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +++eEd ++ +++ G++ W+ Ia+++ gRt++++k++w++ Rsa1.0_00707.1_g00013.1 69 GDFSEEEDNIICSLFASIGSR-WSVIAAHLH-GRTDNDIKNYWNT 111 789******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.148 | 9 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.47E-26 | 11 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.6E-11 | 13 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.1E-14 | 14 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.0E-23 | 15 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 8.65E-8 | 16 | 62 | No hit | No description |
PROSITE profile | PS51294 | 21.355 | 63 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 2.1E-11 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.1E-12 | 69 | 111 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-23 | 70 | 118 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.50E-8 | 71 | 113 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 292 aa Download sequence Send to blast |
MGRAPCCDKA NVKRGPWSPE EDAKLKDYIE KQGTGGNWIA LPHKAGLRRC GKSCRLRWLN 60 YLRPNIRHGD FSEEEDNIIC SLFASIGSRW SVIAAHLHGR TDNDIKNYWN TKLKKKLIAT 120 MAPPPPHQLV AIASSSLSPS SSHYNMTNNL PPYNPTISTN QLISPHLSPH QEMMMTMMDQ 180 QQQQLLYKEA MDSLVNSPNS NKLIMSHQED SHAQSTNKGI MLLSDVRSGS STTSTVTRVK 240 MEQHDHHHEE RSMQDYGMEE INHLISSSCT SSSSNSLWFD ENKTEDTFML YY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 9e-23 | 14 | 117 | 7 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator (By similarity). Positively regulates axillary meristems (AMs) formation and development, especially during inflorescence. {ECO:0000250, ECO:0000269|PubMed:16461581}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_00707.1_g00013.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ670118 | 0.0 | KJ670118.1 Brassica napus MYB transcription factor 38 (MYB38.1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018439280.1 | 0.0 | PREDICTED: transcription factor RAX2 | ||||
Swissprot | Q9SJL7 | 1e-135 | RAX2_ARATH; Transcription factor RAX2 | ||||
TrEMBL | A0A078H3J0 | 1e-178 | A0A078H3J0_BRANA; BnaC04g08340D protein | ||||
STRING | Bo4g031070.1 | 1e-178 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G36890.1 | 1e-131 | MYB family protein |
Publications ? help Back to Top | |||
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