PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00693.1_g00004.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family GRAS
Protein Properties Length: 588aa    MW: 63935.4 Da    PI: 4.4115
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00693.1_g00004.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS261.33.3e-802245874374
                     GRAS   4 lLle.cAeavssgdle...laqalLarlsel.aspdg.d...pmqRlaayfteALaarlarsvselykalppsetseknsseelaa 80 
                              +L++ +Ae   +g+ +   laq +Larl+++ + ++  +   p+qR+a y+te L++ l++         pp+++       ++aa
  Rsa1.0_00693.1_g00004.1 224 QLFNaAAELTGTGNGSppvLAQGILARLNHNlN-NSNiNpkpPFQRAALYVTESLQSLLQH--------SPPQPSL--PLFLKIAA 298
                              44440445555566666779**********963.433244569*****************9........2333333..388999** PP

                     GRAS  81 lklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egpp.slRiTgvgspesg.skeeleetge 163
                              +++fse+sP+l f ++t Nq+Ile+ +g +r+ i+Dfd+++G QW +L+q+L +R+ +++p sl++T ++sp+++ ++ el+ t+e
  Rsa1.0_00693.1_g00004.1 299 HRAFSETSPFLHFVNFTSNQTILESSQGFDRIRIVDFDVGYGSQWSSLIQELGNRSsSSAPlSLKVTSFSSPSTVsDEFELRFTEE 384
                              ********************************************************744556***********9999********* PP

                     GRAS 164 rLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhn 249
                              +L+ fA e gv fe +++ +++l +  l+ Lr + +Ea+aVnl ++        +    + + +L+++k++sP+vvv+++      
  Rsa1.0_00693.1_g00004.1 385 NLRAFAGEAGVAFEMELMNMETLLNPPLSLLRSSDKEAIAVNLPISSVIS----G----YLPFILRFLKQISPNVVVCSDT---IP 459
                              *****************999999999******************954433....3....5566***************986...57 PP

                     GRAS 250 sesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaak 335
                              +++F + +++al+yy++l++sle+  ++ +e+ +++Er++++++i+ v++++ ++    +e+   W + +e++GF+pv++s++a++
  Rsa1.0_00693.1_g00004.1 460 DAPFPNVVIDALQYYASLLESLESP-SSSQEAVTSIERFCVQPWIERVLSNRYRW----MEKTPPWGSLFEQCGFTPVAMSQTAET 540
                              78********************999.67779999*********************....*************************** PP

                     GRAS 336 qaklllrkvksdgyrveee........sgslvlgWkdrpLvsvSaWr 374
                              qa++ll++ +++g+++e++          slvl+W++ +Lv+vSaW+
  Rsa1.0_00693.1_g00004.1 541 QAEYLLQRNPMRGFHLEKRqssssstsTTSLVLCWQKTQLVAVSAWT 587
                              *****************7777777777899****************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098535.349199559IPR005202Transcription factor GRAS
PfamPF035141.1E-77224587IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048768Biological Processroot hair cell tip growth
GO:0051301Biological Processcell division
Sequence ? help Back to Top
Protein Sequence    Length: 588 aa     Download sequence    Send to blast
MPFEELQSFL DSSSYGTRED LCSVVGVNNN NGSEPTSVVD SIRSTSPFLS SSTTTTLSSS  60
HGGPPSGGAG AEGKCNQMTF EDLDGVLSGS PGQEESILRL IMGGDVVDPG SEFMGFDPGS  120
GSDPVIDNPN PLFGYGFPLD LPPPEEEDVK FRIYPNPNPN PCFFSGGSTS PPAKRLNSGQ  180
PVSHHWGHPF SDPGHPFLAP PPKLAGTTEE DYHEEESSAV ITEQLFNAAA ELTGTGNGSP  240
PVLAQGILAR LNHNLNNSNI NPKPPFQRAA LYVTESLQSL LQHSPPQPSL PLFLKIAAHR  300
AFSETSPFLH FVNFTSNQTI LESSQGFDRI RIVDFDVGYG SQWSSLIQEL GNRSSSSAPL  360
SLKVTSFSSP STVSDEFELR FTEENLRAFA GEAGVAFEME LMNMETLLNP PLSLLRSSDK  420
EAIAVNLPIS SVISGYLPFI LRFLKQISPN VVVCSDTIPD APFPNVVIDA LQYYASLLES  480
LESPSSSQEA VTSIERFCVQ PWIERVLSNR YRWMEKTPPW GSLFEQCGFT PVAMSQTAET  540
QAEYLLQRNP MRGFHLEKRQ SSSSSTSTTS LVLCWQKTQL VAVSAWTC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A3e-2529958680374GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00693.1_g00004.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018485145.10.0PREDICTED: scarecrow-like protein 22
SwissprotQ9M0000.0SCL22_ARATH; Scarecrow-like protein 22
TrEMBLA0A078IEB30.0A0A078IEB3_BRANA; BnaC04g22080D protein
TrEMBLA0A3P6CFH90.0A0A3P6CFH9_BRAOL; Uncharacterized protein
STRINGBo4g104900.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM150661619
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60630.10.0GRAS family protein
Publications ? help Back to Top
  1. Gustafson AM, et al.
    ASRP: the Arabidopsis Small RNA Project Database.
    Nucleic Acids Res., 2005. 33(Database issue): p. D637-40
    [PMID:15608278]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Xue XY, et al.
    Interaction between two timing microRNAs controls trichome distribution in Arabidopsis.
    PLoS Genet., 2014. 10(4): p. e1004266
    [PMID:24699192]