PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_00678.1_g00001.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

Nin-like

Protein Properties

Length: 1017aa MW: 113753 Da PI: 7.5477

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_00678.1_g00001.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	90.8	1e-28	626	676	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+i le+l++yF++++kdAAk++gvc+T+LKriCRq+GI RWP+Rkik++ Rsa1.0_00678.1_g00001.1 626 EKTIGLEVLRQYFAGSLKDAAKNIGVCPTTLKRICRQHGITRWPSRKIKKV 676 799**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.029	615	696	IPR003035	RWP-RK domain
Pfam	PF02042	2.1E-24	629	676	IPR003035	RWP-RK domain
SuperFamily	SSF54277	3.27E-23	835	927	No hit	No description
Gene3D	G3DSA:3.10.20.240	2.7E-22	838	924	No hit	No description
SMART	SM00666	5.2E-27	840	925	IPR000270	PB1 domain
PROSITE profile	PS51745	26.056	840	925	IPR000270	PB1 domain
Pfam	PF00564	9.4E-18	841	924	IPR000270	PB1 domain
CDD	cd06407	8.49E-40	841	924	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 1017 aa Download sequence Send to blast
MEGGSGGGHG GFLPNSSFGA FSETATNMDF MDELFFDGCW LEATDGKSLK QTTYTNMNDN 60 NNSFLYDHIS KVETGRKFPS TTPGSLKIED LTSQPMNQVP SDHSAAIIST QAEKFLLEET 120 ERGKRWWIAP RTRQGPSSSV KDRLVQAIKG LNEAVQDKDS LIQIWVPIQQ EGKNFLTTLE 180 QPHSFNPKHL SLKRYRDASV EYNFLADEDS KESVGLPGRV FLGKLPEWTP DVRFFRSEEY 240 PRIKEAQRCD VRGSLALPXS EEYPRIKEAQ RCDVRGSLAL PVFERGSGIC LGVVEIVRTT 300 QKMNYKPELE NICKALEAVN LRSSENLKSP SSEVYDQFYY AALPEVSVFL TSVCRSYDLP 360 LALTWAPCAR QGRGGSRHSD ENFSECVSTV DSACFVLDQQ SYHFQVACSE HHLLQGEGIV 420 GKAFKATKLF FVPEVTTFSK TNYSLAHHAK ISGLHAALAV PLKNKFNGSV EFVLEFFFPK 480 SCLDTEAQQE TLKSLSVTLQ NDFRSLNLVI DKELELEVVF PVKEELLFSE NPLPLEPLPL 540 EEISQEDSSW ISHMIKANEK GKGVSLSWEY QKEEPKEEFM LTSGWDNKNQ ISRGHSSFDA 600 SSFGVGQGQP LLGSRRPGEK RRTKTEKTIG LEVLRQYFAG SLKDAAKNIG VCPTTLKRIC 660 RQHGITRWPS RKIKKVGHSL KKLQLVIDSV QGVQGSIQLD SFYTSFPELS SQNVSGTSFK 720 NNDQSRHLNA QTEKGLSAQG VASRSPPSSS CSHSSGSSTC CSTEANQSTN TANNTLTTTL 780 MAENAGEILK RARSEVKLHT VNMEESKPLS RTLSHKTISE HPLFKSLPES RSRSLKAGGG 840 FKVKATFGEA NVRFTLLPTW GFRELRLEIA RRFNIDNNNI AAFDLKYLDD DKEWVLLTCE 900 ADLEECIDIY RSSQSRTIKI SVHEASQLKL RGSFERERAE GEYAGLKHEG LGSRHGYGSI 960 VPVTRFHRRR APENGEFTPW YKLLKQLGER IIYLAVKSSC LGNPDYAYLP PPSPSLS

Sequence ? help Back to Top

Protein Sequence Length: 1017 aa Download sequence Send to blast

MEGGSGGGHG GFLPNSSFGA FSETATNMDF MDELFFDGCW LEATDGKSLK QTTYTNMNDN  60
NNSFLYDHIS KVETGRKFPS TTPGSLKIED LTSQPMNQVP SDHSAAIIST QAEKFLLEET  120
ERGKRWWIAP RTRQGPSSSV KDRLVQAIKG LNEAVQDKDS LIQIWVPIQQ EGKNFLTTLE  180
QPHSFNPKHL SLKRYRDASV EYNFLADEDS KESVGLPGRV FLGKLPEWTP DVRFFRSEEY  240
PRIKEAQRCD VRGSLALPXS EEYPRIKEAQ RCDVRGSLAL PVFERGSGIC LGVVEIVRTT  300
QKMNYKPELE NICKALEAVN LRSSENLKSP SSEVYDQFYY AALPEVSVFL TSVCRSYDLP  360
LALTWAPCAR QGRGGSRHSD ENFSECVSTV DSACFVLDQQ SYHFQVACSE HHLLQGEGIV  420
GKAFKATKLF FVPEVTTFSK TNYSLAHHAK ISGLHAALAV PLKNKFNGSV EFVLEFFFPK  480
SCLDTEAQQE TLKSLSVTLQ NDFRSLNLVI DKELELEVVF PVKEELLFSE NPLPLEPLPL  540
EEISQEDSSW ISHMIKANEK GKGVSLSWEY QKEEPKEEFM LTSGWDNKNQ ISRGHSSFDA  600
SSFGVGQGQP LLGSRRPGEK RRTKTEKTIG LEVLRQYFAG SLKDAAKNIG VCPTTLKRIC  660
RQHGITRWPS RKIKKVGHSL KKLQLVIDSV QGVQGSIQLD SFYTSFPELS SQNVSGTSFK  720
NNDQSRHLNA QTEKGLSAQG VASRSPPSSS CSHSSGSSTC CSTEANQSTN TANNTLTTTL  780
MAENAGEILK RARSEVKLHT VNMEESKPLS RTLSHKTISE HPLFKSLPES RSRSLKAGGG  840
FKVKATFGEA NVRFTLLPTW GFRELRLEIA RRFNIDNNNI AAFDLKYLDD DKEWVLLTCE  900
ADLEECIDIY RSSQSRTIKI SVHEASQLKL RGSFERERAE GEYAGLKHEG LGSRHGYGSI  960
VPVTRFHRRR APENGEFTPW YKLLKQLGER IIYLAVKSSC LGNPDYAYLP PPSPSLS

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_00678.1_g00001.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189656	0.0	AC189656.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrS015K01, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018477356.1	0.0	PREDICTED: protein NLP2-like isoform X2
Swissprot	Q7X9B9	0.0	NLP2_ARATH; Protein NLP2
TrEMBL	A0A078HS38	0.0	A0A078HS38_BRANA; BnaA03g53210D protein
STRING	Bra017705.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1998	27	77

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35270.1	0.0	Nin-like family protein