PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00650.1_g00007.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family HB-other
Protein Properties Length: 1633aa    MW: 183614 Da    PI: 5.1805
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00650.1_g00007.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.74.1e-182379157
                             TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
                 Homeobox  1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
                             ++kR   t+ ql++Le+ ++ ++yps++ r++L+ +l+L++rq ++WF+ rR k++k
  Rsa1.0_00650.1_g00007.1 23 KSKRKMKTAAQLQVLENTYKAEPYPSEALRADLSVQLNLSDRQLQMWFCHRRLKDRK 79
                             679****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.6E-17679IPR009057Homeodomain-like
SuperFamilySSF466891.63E-151680IPR009057Homeodomain-like
PROSITE profilePS5007116.6012080IPR001356Homeobox domain
SMARTSM003892.1E-162284IPR001356Homeobox domain
PfamPF000469.5E-162379IPR001356Homeobox domain
CDDcd000868.64E-142381No hitNo description
PROSITE profilePS5082716.574539598IPR018501DDT domain
SMARTSM005713.7E-23539598IPR018501DDT domain
PfamPF027911.5E-16540595IPR018501DDT domain
PfamPF050661.7E-15721788IPR007759HB1/Asxl, restriction endonuclease HTH domain
PfamPF156123.5E-7899937IPR028942WHIM1 domain
PfamPF156137.7E-1310481121IPR028941WHIM2 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1633 aa     Download sequence    Send to blast
MEDLSEADKN KTPEGGGGAT ESKSKRKMKT AAQLQVLENT YKAEPYPSEA LRADLSVQLN  60
LSDRQLQMWF CHRRLKDRKS STPAKRQRKD STTPSAAESS KQATAVAATV NAADLVAGNE  120
HNSFPHELDS RRTGGGGVTV VRRFNEPSSS EVRAIGYVEA QLGERLRDDG PILGMEFDPL  180
PPGAFGTPIE MPSHRKAATR PAYETNLYVK PIKDSVRTIR EYQFLPEQPS SRTDHSERAS  240
PASHHYGVPL DASSVVIRAS SVSGGHHRDD YKISPQMIPN LNLSAHQVKP GHVSSHHLGE  300
YDSTYQKSYV DPALHGNEDP FVKSERELGN DNDEDEDGDD DGDDVLLQLE RKRKSEEARI  360
SREVEAHEKR IRKELERQDM LRRKREEQIR KEMERQDRER RKEEERLLRE RQREEERYHK  420
EQMKEMQRRE KFLKKETLRA EKMRQKEEMR RVKEVARLKA ANERAMARKI AKESMELIED  480
ERLELMEVAA LAQGLPSMLA LDFETLQNLD AYRDKQVTFP PTSVNLKKPF AVKPWNGSDE  540
NIANLLMVWR FLINFADVLG LWPFTLDEFT QAFHDHDPRL MGEIHIVLLK TIIKDIEGVA  600
RTLSVCVGAN QNAAANPGGG HPHVVEGAYA WGFDIRSWRK NLNVFTWPEI LRQLALSAGL  660
GPELKKQDIK TMSVHEENEA NNSENVIFNL RVGAAAENAF AKMQERGLSN PRRSRHRLTP  720
GTVKFAAFHV LSIEGEKGLT ILEVAEKIQK SGLRDLTTSR TPEASVAAAL SRDTKLFERV  780
APSTYCVRPS YRKDAGDAET IFAEARERIR IFKSGVTDVD EEAEREEDSE SDVGDDPEVD  840
LNLKKEDPDA LEIAKLTGGV ENGKLETEPT TSLPEDTKAE KIDDILPDQS LEDAVADDGE  900
QWVQGLVEGD YSNLSIEERL NALVALIGIA IEGNTIRISL EERLEVASAL KKQMWSEVQL  960
DKRWKEESLI RANYLSYPTP KLGIQESPSA DVTPISSQDP LQLQENVSGM ETLQYQQQQQ  1020
SYTADRERLR AELKAYVGYK AEELYVYRSL PLGQDRRRNR YWRFSASASR NDPGCGRIFV  1080
ELQDGRWRLI DSEEGFDCLV KSLDVRGVRE SHLHFMLLKI KASFKEAVRK NVDTELCSIS  1140
TGVDLDSDTA EISSTFKIEL GDGDGSGVLQ RFQSFERWMW DNMLHPGALS AFKHGAKKSI  1200
PLFHICRSCA ELHFAGDVCC PGCGQMMPGG LDVSELCFAD QVAQLGEILR RDAGFILRGS  1260
NLSPLRIRLL KIQLALVEAS LPPEGLQTHW TESLRKTWGL KLLSSSSPGE LHQVLTMLEV  1320
AVKRDFLSSN FETTCELLDL SEEAVVRDVK VLPWIPKTTG GVALRLFELD SSIAYTPDQN  1380
KDPQKDKESE DFVGLETNFV RNVQEEQDVI EATPVQVAYA QEDTEPGLVR GRPQRGRGRP  1440
RSQRGKKPSQ ASGGRPPRGA SNSNGEPMLR PRAQPRGGRK KGRRSSGTRT RPTKGTLGIS  1500
NEVVVVGRRG KEVAKTALHD WVETPEDEGE ASSSGRSFQY DDDDVMAPVD DFGESSKLVG  1560
RGEFSLHSDD EYEEEEDTRM NVDDEDEDYI NEDSDGGREQ PAEMISMDAA AAARRRFPFE  1620
DPDLTSSSSS DFQ
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC (PubMed:22694359). Involved in the transcriptional regulation of seed-specific gene expression (PubMed:23872538). {ECO:0000269|PubMed:22694359, ECO:0000269|PubMed:23872538}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00650.1_g00007.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0052396e-76AB005239.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MLN1.
GenBankCP0026886e-76CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018483496.10.0PREDICTED: homeobox-DDT domain protein RLT2 isoform X1
SwissprotQ9FFH10.0RLT2_ARATH; Homeobox-DDT domain protein RLT2
TrEMBLA0A3N6QC360.0A0A3N6QC36_BRACR; Uncharacterized protein
STRINGBo7g067190.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM96012530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44180.10.0Homeodomain-like transcriptional regulator