PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00642.1_g00015.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 350aa    MW: 39360.8 Da    PI: 4.6916
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00642.1_g00015.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.32.3e-19112161255
                      AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                              +y+G+r ++ +g+W+AeIrdp++     r +lg+f+taeeAa+a++aa+++++g
  Rsa1.0_00642.1_g00015.1 112 QYRGIRLRP-WGKWAAEIRDPKK---GSREWLGTFDTAEEAARAYDAAARRIRG 161
                              69*******.**********954...39***********************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.68E-16112170No hitNo description
SuperFamilySSF541715.1E-22112170IPR016177DNA-binding domain
SMARTSM003802.1E-35112175IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.3E-32112170IPR001471AP2/ERF domain
PROSITE profilePS5103223.933112169IPR001471AP2/ERF domain
PfamPF008473.6E-12113161IPR001471AP2/ERF domain
PRINTSPR003671.1E-10113124IPR001471AP2/ERF domain
PRINTSPR003671.1E-10135151IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MCGGAIISDF IPPPKSRRVT SEFIWPDPKK KSKRRSSFFD LDDEFEADFK GFKDDDDYSS  60
FDCEDVKKPF VFTAPTKLVA SRPTTLATTG SVSCKKTIES DEKSGKRKRK NQYRGIRLRP  120
WGKWAAEIRD PKKGSREWLG TFDTAEEAAR AYDAAARRIR GDKAKVNFPE EKMVPTGKTS  180
NLKKPVAKPN QTVALVQQPT AHLSQYCNNS FGDLSFIEEK PQMYNNQFFD VGQYFSSDQG  240
SDSFDCSEFG WSDHGPKTPP EISSMLVNNN QATTFAEETN AAKKVKLNSE DETSNNDDLM  300
AYLDNAMWET PLEVEDMLGV DAAGVTQEEE NPMELWSLDD INSMLDGGVF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-211111771380Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in carotenoid biosynthesis regulation. Binds to the 5'-ATCTA-3' element present in the promoter of phytoene synthase (PSY) and phytoene desaturase (PDS). Involved in ethylene response and resistance to necrotrophic pathogens. Acts as a downstream regulator in the ethylene signaling pathway. Partially redundant with RAP2-12. {ECO:0000269|PubMed:17873090, ECO:0000269|PubMed:20357136, ECO:0000269|PubMed:22530619}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00642.1_g00015.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by darkness, ethylene and Botrytis cinerea. {ECO:0000269|PubMed:20357136, ECO:0000269|PubMed:22530619}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1892531e-114AC189253.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB019N06, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018488938.10.0PREDICTED: ethylene-responsive transcription factor RAP2-2-like
SwissprotQ9LUM41e-152RAP22_ARATH; Ethylene-responsive transcription factor RAP2-2
TrEMBLM4CBG10.0M4CBG1_BRARP; Uncharacterized protein
STRINGBra001541.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14230.31e-142related to AP2 2
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]
  2. Bui LT,Giuntoli B,Kosmacz M,Parlanti S,Licausi F
    Constitutively expressed ERF-VII transcription factors redundantly activate the core anaerobic response in Arabidopsis thaliana.
    Plant Sci., 2015. 236: p. 37-43
    [PMID:26025519]
  3. Gasch P, et al.
    Redundant ERF-VII Transcription Factors Bind to an Evolutionarily Conserved cis-Motif to Regulate Hypoxia-Responsive Gene Expression in Arabidopsis.
    Plant Cell, 2016. 28(1): p. 160-80
    [PMID:26668304]
  4. Yao Y, et al.
    ETHYLENE RESPONSE FACTOR 74 (ERF74) plays an essential role in controlling a respiratory burst oxidase homolog D (RbohD)-dependent mechanism in response to different stresses in Arabidopsis.
    New Phytol., 2017. 213(4): p. 1667-1681
    [PMID:28164334]
  5. Giuntoli B, et al.
    Age-dependent regulation of ERF-VII transcription factor activity in Arabidopsis thaliana.
    Plant Cell Environ., 2017. 40(10): p. 2333-2346
    [PMID:28741696]