PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_00641.1_g00006.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

G2-like

Protein Properties

Length: 375aa MW: 42840 Da PI: 6.1829

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_00641.1_g00006.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	27	1e-08	1	21	35	55
G2-like 35 lmkvkgLtlehvkSHLQkYRl 55 +m+v+g+ l+hvkSHLQk+Rl Rsa1.0_00641.1_g00006.1 1 MMEVEGIGLHHVKSHLQKFRL 21 7*******************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	4.9E-6	1	21	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 375 aa Download sequence Send to blast
MMEVEGIGLH HVKSHLQKFR LGRCNIRDET DQYHKRYRGR RIFKAYAASN SPRAQVNIRP 60 KVIGDVKPKK AKEDHGSLYM LIEQGLNLQR CREAERMQMA FEIENNRKML EAQYLQASMV 120 PTITNQHINY ISTTTPATQQ PSSQTSDQWL TERYSRRQTS DSQQPTTMIL QTTTCLPKCD 180 LPQETSNTFS MYQPQHMNTS TQEQQFNSSL NYNITQGFIN PCVTTEPQSM PGSSIVTNQA 240 KLQLNDDCVI HDSYPNPSFL PTAVPQTVDS LHQVISNITF PLLTTSQPIQ THAPNRTYNY 300 PEYNTLERVK AQLSALQYSS TSRIQAAPSR ETNLLSSATR DDEEDPVDMY IDWGKYDEVD 360 IDELDPVEAL MALGF

Sequence ? help Back to Top

Protein Sequence Length: 375 aa Download sequence Send to blast

MMEVEGIGLH HVKSHLQKFR LGRCNIRDET DQYHKRYRGR RIFKAYAASN SPRAQVNIRP  60
KVIGDVKPKK AKEDHGSLYM LIEQGLNLQR CREAERMQMA FEIENNRKML EAQYLQASMV  120
PTITNQHINY ISTTTPATQQ PSSQTSDQWL TERYSRRQTS DSQQPTTMIL QTTTCLPKCD  180
LPQETSNTFS MYQPQHMNTS TQEQQFNSSL NYNITQGFIN PCVTTEPQSM PGSSIVTNQA  240
KLQLNDDCVI HDSYPNPSFL PTAVPQTVDS LHQVISNITF PLLTTSQPIQ THAPNRTYNY  300
PEYNTLERVK AQLSALQYSS TSRIQAAPSR ETNLLSSATR DDEEDPVDMY IDWGKYDEVD  360
IDELDPVEAL MALGF

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_00641.1_g00006.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018487705.1	0.0	PREDICTED: putative two-component response regulator ARR21
TrEMBL	A0A0D3D4Q6	0.0	A0A0D3D4Q6_BRAOL; Uncharacterized protein
TrEMBL	A0A3P6EKU4	0.0	A0A3P6EKU4_BRAOL; Uncharacterized protein
STRING	Bo7g030940.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13406	15	20

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G06020.1	3e-41	G2-like family protein