PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_00632.1_g00007.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | NAC | ||||||||
Protein Properties | Length: 170aa MW: 19373.8 Da PI: 4.3976 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 82.4 | 9.2e-26 | 6 | 86 | 1 | 80 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratks 80 l pGfrFhPtd elv +yLk+kv gkk+ + ++i+e+diyk+eP dLp k ++++++ +wyfF++r kky++g ++nr+t+s Rsa1.0_00632.1_g00007.1 6 LEPGFRFHPTDVELVRYYLKRKVLGKKFMT-NAIAELDIYKFEPPDLPeKsCLRTGDLKWYFFCPRLKKYPNGGKANRSTES 86 579************************988.89**************95357788889********************9975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.09E-27 | 4 | 86 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 23.287 | 6 | 170 | IPR003441 | NAC domain |
Pfam | PF02365 | 8.8E-13 | 8 | 85 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 170 aa Download sequence Send to blast |
MVKNSLEPGF RFHPTDVELV RYYLKRKVLG KKFMTNAIAE LDIYKFEPPD LPEKSCLRTG 60 DLKWYFFCPR LKKYPNGGKA NRSTESDDDD FYSMLDLFVV DSDESLRLDG FNNQYEVRHE 120 TGVPVVDEAP VSLEDVDMSW MQGDELFIGI EELIEPSTPP AAQAGHPGAS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 4e-23 | 5 | 84 | 14 | 91 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that binds specific DNA sequences on the promoter regions of target genes. {ECO:0000250|UniProtKB:Q9C8W9}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_00632.1_g00007.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF738277 | 1e-118 | KF738277.1 Brassica napus NAC transcription factor 103 (NAC103.1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018488474.1 | 7e-56 | PREDICTED: NAC domain-containing protein 82 isoform X1 | ||||
Refseq | XP_018488475.1 | 7e-56 | PREDICTED: NAC domain-containing protein 82 isoform X2 | ||||
Swissprot | Q9FY82 | 6e-39 | NAC82_ARATH; NAC domain-containing protein 82 | ||||
TrEMBL | A0A078D5T2 | 3e-52 | A0A078D5T2_BRANA; NAC transcription factor 103 | ||||
TrEMBL | A0A0D3BF79 | 3e-52 | A0A0D3BF79_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6BBT7 | 3e-52 | A0A3P6BBT7_BRAOL; Uncharacterized protein | ||||
STRING | Bo3g101690.1 | 5e-53 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7967 | 13 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G64060.1 | 1e-48 | NAC domain containing protein 103 |
Publications ? help Back to Top | |||
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