PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00625.1_g00003.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family WRKY
Protein Properties Length: 321aa    MW: 35880.2 Da    PI: 9.7135
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00625.1_g00003.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.61.9e-31130188260
                              --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                     WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                              +DgynWrKYGqK+vkgse+prsY+rCt+++C +kkkve+s   ++v+ei+Y+g+Hnh+k
  Rsa1.0_00625.1_g00003.1 130 EDGYNWRKYGQKQVKGSENPRSYFRCTYPNCVTKKKVETSLLKGHVTEIVYKGSHNHPK 188
                              7********************************************************85 PP
2WRKY103.89.2e-33244302159
                              ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                     WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                              ldDgy+WrKYGqK+vkg+++prsYY+Ct++gC+v+k+ver+ +d k v++tYeg+Hnh+
  Rsa1.0_00625.1_g00003.1 244 LDDGYRWRKYGQKVVKGNPNPRSYYKCTFTGCCVRKQVERAFHDAKSVITTYEGKHNHH 302
                              59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.809.9E-27121189IPR003657WRKY domain
PROSITE profilePS5081123.525124189IPR003657WRKY domain
SuperFamilySSF1182905.75E-25127189IPR003657WRKY domain
SMARTSM007742.5E-33129188IPR003657WRKY domain
PfamPF031062.8E-23130187IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.5E-36229304IPR003657WRKY domain
SuperFamilySSF1182905.89E-29236304IPR003657WRKY domain
PROSITE profilePS5081136.162239304IPR003657WRKY domain
SMARTSM007742.7E-37244303IPR003657WRKY domain
PfamPF031061.2E-24245302IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0070370Biological Processcellular heat acclimation
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MGSFNQQRSV PKFKSATPSP LPLSSYFSLP PGLTQADLLD SPLLFTSSNV LPSPTTGTFP  60
LKSLNWKSNG LLIDQNEIKA EDGKEKQFDF AFNTNQTSPL LFISHFQTGD ETSTQVNVPK  120
VHESGNKTSE DGYNWRKYGQ KQVKGSENPR SYFRCTYPNC VTKKKVETSL LKGHVTEIVY  180
KGSHNHPKPE STRRSASTAA TSDVSSHQSG AGEDNVVDAK RGKREEAVKE PRVVVQTTSD  240
IDILDDGYRW RKYGQKVVKG NPNPRSYYKC TFTGCCVRKQ VERAFHDAKS VITTYEGKHN  300
HHIPPTQRKI SHLSMADCVS F
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-34130304877Probable WRKY transcription factor 4
2lex_A3e-34130304877Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Functions with WRKY25 and WRKY33 as positive regulator of plant thermotolerance by partially participating in ethylene-response signal transduction pathway (PubMed:21336597). {ECO:0000250|UniProtKB:Q9SI37, ECO:0000269|PubMed:21336597}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00494DAPTransfer from AT5G07100Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00625.1_g00003.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid (PubMed:11449049). Induced by heat stress (PubMed:21336597). {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:21336597}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC2465720.0KC246572.1 Brassica napus WRKY transcription factor 26.1 (WRKY26.1) mRNA, complete cds.
GenBankKF4300440.0KF430044.1 Brassica rapa WRKY transcription factor 26 (WRKY26) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018471688.10.0PREDICTED: probable WRKY transcription factor 26
SwissprotQ9C5T31e-144WRK26_ARATH; Probable WRKY transcription factor 26
TrEMBLV5REL50.0V5REL5_BRACM; WRKY transcription factor 26
STRINGBra028707.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM152911518
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07100.11e-133WRKY DNA-binding protein 26
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]