PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00621.1_g00010.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family HSF
Protein Properties Length: 271aa    MW: 30108.4 Da    PI: 5.1525
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00621.1_g00010.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind116.22.1e-36121022101
                              HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXX CS
             HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFk 87 
                              Fl+k+y++++d+++++++sw+e+g++fvv+++ efak++LpkyFkh+nf+SF+RQLn+YgF+k+  ++         weF++++F+
  Rsa1.0_00621.1_g00010.1  12 FLSKTYQLVDDQSTDDVVSWNEDGTAFVVWETAEFAKHLLPKYFKHNNFSSFIRQLNTYGFRKTVPDK---------WEFANDNFR 88 
                              9***************************************************************9999.........********* PP

                              XXXXXXXXXXXXXX CS
             HSF_DNA-bind  88 kgkkellekikrkk 101
                              +g+++ll++i+r+k
  Rsa1.0_00621.1_g00010.1  89 RGQEDLLSEIRRRK 102
                              ************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.108.1E-39395IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467854.63E-358101IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.0E-598101IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.9E-211235IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004477.2E-3312101IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.9E-215062IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.9E-216375IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MTAAQRSAPA PFLSKTYQLV DDQSTDDVVS WNEDGTAFVV WETAEFAKHL LPKYFKHNNF  60
SSFIRQLNTY GFRKTVPDKW EFANDNFRRG QEDLLSEIRR RKAVIAAAAE SNSAGDDDDS  120
TSSPGSKNPG SVENMVADLS GENKKLKREN SSLCSELAAA KRQRDELVAF LKDQLKVGPE  180
QVDQMIKGGK FKPNVARDSS SEEESDCEGC GGDGEEEGVG EGLKLFGVWL KGERKKRGRD  240
EKNFVVGGSH MTEIENVDFH APLWKSSKVC N
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-25310121129Heat shock factor protein 1
5d5v_B1e-25310121129Heat shock factor protein 1
5d5v_D1e-25310121129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00621.1_g00010.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat stress. {ECO:0000269|PubMed:9645433}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018477806.10.0PREDICTED: heat stress transcription factor B-1-like
SwissprotQ963201e-139HSFB1_ARATH; Heat stress transcription factor B-1
TrEMBLM4DMR51e-180M4DMR5_BRARP; Uncharacterized protein
STRINGBra017800.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61012546
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36990.11e-115heat shock factor 4
Publications ? help Back to Top
  1. Weng M, et al.
    Histone chaperone ASF1 is involved in gene transcription activation in response to heat stress in Arabidopsis thaliana.
    Plant Cell Environ., 2014. 37(9): p. 2128-38
    [PMID:24548003]
  2. Nagashima Y,Iwata Y,Ashida M,Mishiba K,Koizumi N
    Exogenous salicylic acid activates two signaling arms of the unfolded protein response in Arabidopsis.
    Plant Cell Physiol., 2014. 55(10): p. 1772-8
    [PMID:25138441]
  3. Nie S,Yue H,Xing D
    A Potential Role for Mitochondrial Produced Reactive Oxygen Species in Salicylic Acid-Mediated Plant Acquired Thermotolerance.
    Plant Physiol., 2016.
    [PMID:26099269]
  4. Hossain MA, et al.
    Identification of Novel Components of the Unfolded Protein Response in Arabidopsis.
    Front Plant Sci, 2016. 7: p. 650
    [PMID:27242851]
  5. Röth S,Mirus O,Bublak D,Scharf KD,Schleiff E
    DNA-binding and repressor function are prerequisites for the turnover of the tomato heat stress transcription factor HsfB1.
    Plant J., 2017. 89(1): p. 31-44
    [PMID:27560701]
  6. Xu G, et al.
    uORF-mediated translation allows engineered plant disease resistance without fitness costs.
    Nature, 2017. 545(7655): p. 491-494
    [PMID:28514448]