PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00621.1_g00002.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 186aa    MW: 20622.8 Da    PI: 7.7284
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00621.1_g00002.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2591.2e-182170255
                      AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                              ykG+r +k +g+WvAeIr+p   +kr r++lg++ t+e Aa+a++ a  +l+g
  Rsa1.0_00621.1_g00002.1 21 PYKGIRMRK-WGKWVAEIREP---NKRSRIWLGSYSTPEAAARAYDTAVFYLRG 70
                             69*****99.**********9...336*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103222.8132178IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-212179IPR016177DNA-binding domain
SMARTSM003809.1E-392184IPR001471AP2/ERF domain
PRINTSPR003675.0E-92233IPR001471AP2/ERF domain
CDDcd000181.11E-262280No hitNo description
PfamPF008473.7E-122270IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-302279IPR001471AP2/ERF domain
PRINTSPR003675.0E-94460IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MEVAAAVPTS AVATARKREK PYKGIRMRKW GKWVAEIREP NKRSRIWLGS YSTPEAAARA  60
YDTAVFYLRG PSARLNFPEL LAGVKVAGGN GGGDMSAAYI RRKAAEVGAQ VDALEAAGGN  120
RHHHHQQYQR GDHDYVDDDH SVNHSDYRLN DGQHECSSKE GFKRCNASWE AVDLNKLPDP  180
ETSDDD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-152078463ATERF1
3gcc_A2e-152078463ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00020PBMTransfer from AT4G36900Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00621.1_g00002.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2325120.0AC232512.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB065B14, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018480385.11e-137PREDICTED: LOW QUALITY PROTEIN: ethylene-responsive transcription factor RAP2-10
SwissprotQ9SW631e-87RA210_ARATH; Ethylene-responsive transcription factor RAP2-10
TrEMBLA0A0D3DI451e-124A0A0D3DI45_BRAOL; Uncharacterized protein
TrEMBLA0A3P6F6I71e-124A0A3P6F6I7_BRAOL; Uncharacterized protein
STRINGBo7g118430.11e-124(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36900.13e-86related to AP2 10
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Coego A, et al.
    The TRANSPLANTA collection of Arabidopsis lines: a resource for functional analysis of transcription factors based on their conditional overexpression.
    Plant J., 2014. 77(6): p. 944-53
    [PMID:24456507]