PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_00608.1_g00016.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

TCP

Protein Properties

Length: 347aa MW: 38541.2 Da PI: 6.9347

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_00608.1_g00016.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	109	6.8e-34	26	125	1	89
TCP 1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssas... 83 a+g+kdrhsk+ T++g+RdRRvRl a++a++f+d+qd+L +d++sk+++WL+++ak+ai++l t+ + ++ ++++ssss+ + Rsa1.0_00608.1_g00016.1 26 ATGRKDRHSKVFTSKGPRDRRVRLAAHTAIQFYDVQDRLQYDRPSKAVDWLIKKAKAAIDKLETTQEPENTTTKPGSSSSEPNlvd 111 589**************************************************************555554444444444333221 PP TCP 84 nsssg...........k 89 + + + Rsa1.0_00608.1_g00016.1 112 T---QtqfvaanldpeD 125 1...1222333344431 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	4.9E-28	27	134	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	30.346	29	87	IPR017887	Transcription factor TCP subgroup

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009965	Biological Process	leaf morphogenesis
GO:0030154	Biological Process	cell differentiation
GO:0045962	Biological Process	positive regulation of development, heterochronic

Sequence ? help Back to Top
Protein Sequence Length: 347 aa Download sequence Send to blast
MGLKGYSAGD EVGEIIEVPG GHIIRATGRK DRHSKVFTSK GPRDRRVRLA AHTAIQFYDV 60 QDRLQYDRPS KAVDWLIKKA KAAIDKLETT QEPENTTTKP GSSSSEPNLV DTQTQFVAAN 120 LDPEDAMKTF FPATTSGGGT NMNFQNYPHH HDADNIVSRT TTTTPNLSQD LGLSLHPFQG 180 NNISNTVVPE TNNFPTAHFE TFGRISGWNN HDLTMTSSSS PSEQQQEQER GNGGFMVNLH 240 HHQPSMMTLL NSQQQQVFLG GQQQQRGTLQ SSLFPHSFRS WDHHHQTTSD NHHHHHHHNQ 300 ASPVMFASSS QYGSHGMMMM QGLSFPIHGE ESTQPNSSSS PPPNSHL

Sequence ? help Back to Top

Protein Sequence Length: 347 aa Download sequence Send to blast

MGLKGYSAGD EVGEIIEVPG GHIIRATGRK DRHSKVFTSK GPRDRRVRLA AHTAIQFYDV  60
QDRLQYDRPS KAVDWLIKKA KAAIDKLETT QEPENTTTKP GSSSSEPNLV DTQTQFVAAN  120
LDPEDAMKTF FPATTSGGGT NMNFQNYPHH HDADNIVSRT TTTTPNLSQD LGLSLHPFQG  180
NNISNTVVPE TNNFPTAHFE TFGRISGWNN HDLTMTSSSS PSEQQQEQER GNGGFMVNLH  240
HHQPSMMTLL NSQQQQVFLG GQQQQRGTLQ SSLFPHSFRS WDHHHQTTSD NHHHHHHHNQ  300
ASPVMFASSS QYGSHGMMMM QGLSFPIHGE ESTQPNSSSS PPPNSHL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zkt_A	2e-20	34	87	1	54	Putative transcription factor PCF6
5zkt_B	2e-20	34	87	1	54	Putative transcription factor PCF6
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Functional Description ? help Back to Top
Source	Description
UniProt	Plays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). {ECO:0000269\|PubMed:17307931, ECO:0000269\|PubMed:25378179}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_00608.1_g00016.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018434158.1	0.0	PREDICTED: transcription factor TCP10
Swissprot	O82277	1e-144	TCP10_ARATH; Transcription factor TCP10
TrEMBL	A0A0D3BTA8	0.0	A0A0D3BTA8_BRAOL; Uncharacterized protein
STRING	Bo4g053680.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM14158	19	24

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31070.1	1e-127	TCP domain protein 10

Publications ? help Back to Top
Koyama T,Sato F,Ohme-Takagi M Roles of miR319 and TCP Transcription Factors in Leaf Development. Plant Physiol., 2017. 175(2): p. 874-885 [PMID:28842549] Bresso EG,Chorostecki U,Rodriguez RE,Palatnik JF,Schommer C Spatial Control of Gene Expression by miR319-Regulated TCP Transcription Factors in Leaf Development. Plant Physiol., 2018. 176(2): p. 1694-1708 [PMID:29133375]