PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00593.1_g00010.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 329aa    MW: 37251.6 Da    PI: 4.6325
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00593.1_g00010.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.12.1e-18121171155
                      AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                              ++++GVr+++ +g+++AeIrdp     +  +r++lg+f taeeAa  +++a+ kl+g
  Rsa1.0_00593.1_g00010.1 121 KKFRGVRRRP-WGKYAAEIRDP-----HqrRRIWLGTFSTAEEAAVVYDNAAIKLRG 171
                              59********.**********7.....235*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.95E-32121178No hitNo description
Gene3DG3DSA:3.30.730.107.7E-29122179IPR001471AP2/ERF domain
SMARTSM003801.6E-39122185IPR001471AP2/ERF domain
PfamPF008471.5E-10122171IPR001471AP2/ERF domain
SuperFamilySSF541712.55E-21122179IPR016177DNA-binding domain
PROSITE profilePS5103222.8122179IPR001471AP2/ERF domain
PRINTSPR003672.3E-9123134IPR001471AP2/ERF domain
PRINTSPR003672.3E-9145161IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MMMDEYMDFR PVKYTEHKKV IKKYTKKLSV ENKKKISTVH DSARLVRVCV MDGDATDSSS  60
DDEEEFLFPR RRVKRLINEI RVEPSSSSGE VSALIKTEKS LAVDSPLQEV SVSAAADQNQ  120
KKFRGVRRRP WGKYAAEIRD PHQRRRIWLG TFSTAEEAAV VYDNAAIKLR GPDALTNFTV  180
PPEPEPVPDR ESNVSVLSAS ESTEDSHHHL SSPTSVLNYH ISEPVDEPVK PVKQEFLEPE  240
TISGHVDEVN VPFSLDIPFP DNYFTETLQD ISIFDQSMSP IQSSENNFLD DLMLFDNNNI  300
GENYSSQIKE IGSIFNDLDD SLISELLVV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-21121178159ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A4e-21121178462ATERF1
3gcc_A4e-21121178462ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00593.1_g00010.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018480801.10.0PREDICTED: ethylene-responsive transcription factor CRF4-like
RefseqXP_018485033.10.0PREDICTED: ethylene-responsive transcription factor CRF4-like
SwissprotQ9SUE31e-151CRF4_ARATH; Ethylene-responsive transcription factor CRF4
TrEMBLA0A078GTN90.0A0A078GTN9_BRANA; BnaA03g48910D protein
TrEMBLA0A397KZ550.0A0A397KZ55_BRACM; Uncharacterized protein
TrEMBLM4FIB00.0M4FIB0_BRARP; Uncharacterized protein
STRINGBra040839.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22292576
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.11e-141cytokinin response factor 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zwack PJ,Compton MA,Adams CI,Rashotte AM
    Cytokinin response factor 4 (CRF4) is induced by cold and involved in freezing tolerance.
    Plant Cell Rep., 2016. 35(3): p. 573-84
    [PMID:26650835]
  3. Raines T, et al.
    The cytokinin response factors modulate root and shoot growth and promote leaf senescence in Arabidopsis.
    Plant J., 2016. 85(1): p. 134-47
    [PMID:26662515]