PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00589.1_g00010.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family G2-like
Protein Properties Length: 342aa    MW: 39154.4 Da    PI: 7.4167
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00589.1_g00010.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.36.2e-3260113255
                  G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                              prlrWtp+LH rFv+ave+LGG+e+AtPk ++++m++kgL+++hvkSHLQ+YR+
  Rsa1.0_00589.1_g00010.1  60 PRLRWTPDLHLRFVRAVERLGGQERATPKLVRQMMNIKGLSIAHVKSHLQMYRS 113
                              8****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.27356116IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.6E-2956114IPR009057Homeodomain-like
SuperFamilySSF466891.97E-1458114IPR009057Homeodomain-like
TIGRFAMsTIGR015571.5E-2260115IPR006447Myb domain, plants
PfamPF002491.2E-961112IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MIPSIEGSGN TDREEEEEEE EEEEEEDGEG EESKISSNTT VEAEVNKKTK VRPYVRSKVP  60
RLRWTPDLHL RFVRAVERLG GQERATPKLV RQMMNIKGLS IAHVKSHLQM YRSKKMDDQG  120
QAIADHRHFM ETSTDRNIYK LSQLPMFRGY NMNYNHDSPF RYGSKFSNAS LWSSSSHETN  180
RSLIDRPGSI CGSSVSNNIH GSEYLTNNRS FQNNFSSKIS NHLPKLRYNH QERTNLATFN  240
SIQGHSRAFQ KFETGNEERT NHAYCNKTAG KRNASTRIDL DLSLKLRVPE ETVLEETETA  300
ATTTDQTLSL SLCSWKKSRV IKTDEEDRTV KNGQASTLDL TL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A8e-1761115357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B8e-1761115357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C8e-1761115357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D8e-1761115357Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00297DAPTransfer from AT2G38300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00589.1_g00010.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018437061.10.0PREDICTED: myb family transcription factor PHL8
TrEMBLA0A0D3BQY80.0A0A0D3BQY8_BRAOL; Uncharacterized protein
STRINGBo4g029640.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36328184
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38300.11e-173G2-like family protein