PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_00576.1_g00026.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

Dof

Protein Properties

Length: 302aa MW: 31819.7 Da PI: 7.1346

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_00576.1_g00026.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	122	2e-38	49	109	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++++lkcprC s ntkfCyynny+lsqPr+fCk+CrryWtkGG lrnvPvGgg+rk k+s+ Rsa1.0_00576.1_g00026.1 49 HHQSLKCPRCSSLNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGVLRNVPVGGGCRKAKRSK 109 57899*****************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-33	40	107	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	7.1E-33	51	107	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.366	53	107	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	55	91	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 302 aa Download sequence Send to blast
MQDIHDYSMT GGGGSGGSTG RFYGGGIGGG GGGGGDRRMR THQNSILNHH QSLKCPRCSS 60 LNTKFCYYNN YNLSQPRHFC KNCRRYWTKG GVLRNVPVGG GCRKAKRSKS KQPTSSSPSS 120 ADKPTTQNVE EKSSSSESSS LTASNSTVTA SNATVSAVAV TATVASSSGV MDTDMPNLKQ 180 YGNGIEWSTL LGQGSSDGGA FSEIGCFTAA STVETTPFGL GGTFVNQQSI ADHLKLEGNT 240 LPQQFGDPTA QVDPNMGFEP LDWGSGGGDQ TLFDLTSSVD HAYWSQSQWA SSDQDQNGLY 300 LP

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. Enhances the DNA binding of OBF transcription factors to OCS elements (By similarity). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00570	DAP	Transfer from AT5G60850	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_00576.1_g00026.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018485182.1	0.0	PREDICTED: LOW QUALITY PROTEIN: dof zinc finger protein DOF5.4
Swissprot	Q8LDR0	1e-135	DOF54_ARATH; Dof zinc finger protein DOF5.4
TrEMBL	M4D943	1e-164	M4D943_BRARP; Uncharacterized protein
STRING	Bra013003.1-P	1e-165	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4482	26	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60850.1	2e-55	OBF binding protein 4

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Xu P,Chen H,Ying L,Cai W AtDOF5.4/OBP4, a DOF Transcription Factor Gene that Negatively Regulates Cell Cycle Progression and Cell Expansion in Arabidopsis thaliana. Sci Rep, 2016. 6: p. 27705 [PMID:27297966] Ramirez-Parra E, et al. The transcription factor OBP4 controls root growth and promotes callus formation. New Phytol., 2017. 213(4): p. 1787-1801 [PMID:27859363] Rymen B, et al. ABA Suppresses Root Hair Growth via the OBP4 Transcriptional Regulator. Plant Physiol., 2017. 173(3): p. 1750-1762 [PMID:28167701]