PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00573.1_g00012.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB
Protein Properties Length: 273aa    MW: 31082.8 Da    PI: 4.9881
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00573.1_g00012.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.31.1e-151461148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                             +g WT eEd +lv +++++G g+W+t +++ g+ R +k+c++rw++yl
  Rsa1.0_00573.1_g00012.1 14 KGEWTSEEDRILVAYINEYGLGDWRTLPKRAGLQRYGKSCRLRWLNYL 61
                             799*******************************************97 PP
2Myb_DNA-binding54.33e-1767111147
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                              rg++T++E++ +++ + +lG++ W++Ia+ m+ +Rt++++k++w++ 
  Rsa1.0_00573.1_g00012.1  67 RGKFTPQEEDDIIRFHSLLGNR-WAAIAKQMP-NRTDNDIKNHWNSC 111
                              89********************.*********.***********975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.199961IPR017930Myb domain
SuperFamilySSF466893.02E-2911108IPR009057Homeodomain-like
SMARTSM007179.9E-121363IPR001005SANT/Myb domain
PfamPF002493.1E-131461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.4E-221568IPR009057Homeodomain-like
CDDcd001674.49E-91661No hitNo description
PROSITE profilePS5129425.26662116IPR017930Myb domain
SMARTSM007171.8E-1566114IPR001005SANT/Myb domain
PfamPF002492.5E-1667111IPR001005SANT/Myb domain
CDDcd001678.33E-1069109No hitNo description
Gene3DG3DSA:1.10.10.603.4E-2569117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MGRTTWLDDD GLKKGEWTSE EDRILVAYIN EYGLGDWRTL PKRAGLQRYG KSCRLRWLNY  60
LRPGIKRGKF TPQEEDDIIR FHSLLGNRWA AIAKQMPNRT DNDIKNHWNS CLKKRLVRSG  120
IDPMTHEPVV KATSSSTTLS PTLTPSSCSS SFSSTSSARL LNRLAAGISS RKHGLDRIKN  180
VILSKPRQAV EEDKLMISNN EEEEEVTGCF MEIDDNLIST TSLDELLCES TTAFDDYSLV  240
EPYDLYQSDI YHEADDQLDL FLEIHSLGQE DLS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-27121165108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtFunctions as a repressor of epidermal cell outgrowth and negatively regulate trichome branch formation (PubMed:18805951, PubMed:21070410). Acts as both a positive and negative regulator of cellular outgrowth. Promotes both trichome expansion and branch formation (PubMed:21070410). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). May play a role in the regulation of cuticle formation in vegetative organs (PubMed:24169067). {ECO:0000269|PubMed:18805951, ECO:0000269|PubMed:21070410, ECO:0000269|PubMed:23709630, ECO:0000269|PubMed:24169067}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00573.1_g00012.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF7382850.0KF738285.1 Brassica napus MYB transcription factor 95 (MYB95.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018445390.10.0PREDICTED: transcription factor MYB34-like
SwissprotQ9LE631e-59MY106_ARATH; Transcription factor MYB106
TrEMBLV4K9J51e-142V4K9J5_EUTSA; Uncharacterized protein
STRINGXP_006390428.11e-143(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74430.11e-116myb domain protein 95