PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00573.1_g00010.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB
Protein Properties Length: 277aa    MW: 31787.7 Da    PI: 5.2517
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00573.1_g00010.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.32.7e-161461148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                             +g WT+eEd  lv ++ ++G g+W++ +++ g+ R++k+c++rw++yl
  Rsa1.0_00573.1_g00010.1 14 KGEWTAEEDRMLVAYISEYGLGDWRAMPKRAGLQRCGKSCRLRWLNYL 61
                             799*******************************************97 PP
2Myb_DNA-binding57.33.6e-1867111147
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                              rg++T++E+e +++++  lG++ W++Ia+ m+ +Rt++++k++w++ 
  Rsa1.0_00573.1_g00010.1  67 RGKFTPQEEEDIIKLHSVLGNR-WAAIAKQMP-NRTDNDIKNHWNSC 111
                              89********************.*********.***********975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.223961IPR017930Myb domain
SuperFamilySSF466892.05E-3011108IPR009057Homeodomain-like
SMARTSM007173.5E-141363IPR001005SANT/Myb domain
PfamPF002499.7E-151461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.3E-231568IPR009057Homeodomain-like
CDDcd001675.52E-111661No hitNo description
PROSITE profilePS5129426.40962116IPR017930Myb domain
SMARTSM007174.8E-1666114IPR001005SANT/Myb domain
PfamPF002491.1E-1667111IPR001005SANT/Myb domain
CDDcd001671.63E-1069109No hitNo description
Gene3DG3DSA:1.10.10.604.7E-2669117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MGRTTWFDED GLKKGEWTAE EDRMLVAYIS EYGLGDWRAM PKRAGLQRCG KSCRLRWLNY  60
LRPGIKRGKF TPQEEEDIIK LHSVLGNRWA AIAKQMPNRT DNDIKNHWNS CLKKRLVRSG  120
IDPMTHEPVV NVKATNSPTT SSPLLTPSST SFSFSPTSSA RLLNRLAAGI SSRKHGLDRI  180
KNVILSEPRQ AVEENKLMIS SKEDEEEEVN GCFMEIDDNL ISTTSLDELL CEPYDLYQSD  240
FYHETGHYDL YQSDFYHETD DQLDLFLEIH SFGQDLS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-28121165108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00573.1_g00010.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018444199.10.0PREDICTED: myb-related protein 308-like
TrEMBLA0A397YNY71e-147A0A397YNY7_BRACM; Uncharacterized protein
STRINGBra003801.1-P1e-146(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74430.11e-111myb domain protein 95