PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00562.1_g00005.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family Trihelix
Protein Properties Length: 400aa    MW: 45496.5 Da    PI: 5.6948
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00562.1_g00005.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix84.41.5e-2676157286
                 trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                              W ++e+++Li++rre+++ ++++k++k+lWee+s+kmrergf rsp +C++kw+nl k++kk  + +k+++ ++   +++++++e
  Rsa1.0_00562.1_g00005.1  76 WAQDETRTLITLRRETDSLFNTSKSNKHLWEEISSKMRERGFDRSPAMCTDKWRNLLKEFKKASNDDKGGSGGK---MSHYKEIE 157
                              ********************************************************************985444...67888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.6E-467136IPR009057Homeodomain-like
PROSITE profilePS500908.61868132IPR017877Myb-like domain
SMARTSM007174.4E-472134IPR001005SANT/Myb domain
CDDcd122033.96E-2874138No hitNo description
PfamPF138371.6E-2075158No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
MFTSSDKPPS PIDFYKDDNS NQSPTSRDIE MMIDGDLQPP PHHQILLGDN NSSNSSSEDH  60
EITTTTKAPK KRAETWAQDE TRTLITLRRE TDSLFNTSKS NKHLWEEISS KMRERGFDRS  120
PAMCTDKWRN LLKEFKKASN DDKGGSGGKM SHYKEIEDIL RERSKKVAVA ATSYKSVTTP  180
SKVDSFLQFP DKGFEDAGLS FEGNGRPTLN LERELDHDGH PLAIASADAV TANGVPTPWN  240
WREPTAGNGK RSDGQQFVGK IITVKYGDYT RRVGIDGTAE AIKEAIRSAF RLRTRRAFWL  300
EDEEQVVRSL DRDMPLGNYT LHVDEGIAVR VCHYDESDPL PVHQEEKVFY TEEDYREFLG  360
RRGWTCLREF DGGFRNIDGM VRNVDSMDDL QPGVLYRGMR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2jmw_A2e-4170155186DNA binding protein GT-1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00380DAPTransfer from AT3G25990Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00562.1_g00005.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018441514.10.0PREDICTED: trihelix transcription factor GT-4-like
SwissprotQ9LU920.0TGT4_ARATH; Trihelix transcription factor GT-4
TrEMBLA0A3P6B6280.0A0A3P6B628_BRACM; Uncharacterized protein
STRINGBra036354.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28912768
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G25990.10.0Trihelix family protein