PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_00554.1_g00002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 260aa MW: 29694.4 Da PI: 8.5591 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 94.1 | 6.5e-30 | 35 | 84 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien++ rqvtf+kRrng+lKKA+ELSvLCdaeva+++fs++g+lyey+ Rsa1.0_00554.1_g00002.1 35 KRIENTTSRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSTRGRLYEYA 84 79***********************************************8 PP | |||||||
2 | K-box | 111.8 | 7e-37 | 107 | 198 | 8 | 99 |
K-box 8 sleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenka 93 ++ea+++++qqe++kL+++i+ +q+++Rh++Ge+L+sL++keL++Le +Lek+++++RskKnell++++e++ k+e elq++n++ Rsa1.0_00554.1_g00002.1 107 TVTEANTQYYQQEASKLRRQIRDIQNSNRHIVGESLGSLNFKELKNLEGRLEKGISRVRSKKNELLVAEMEYMHKREMELQHDNMY 192 4899********************************************************************************** PP K-box 94 Lrkkle 99 Lr+k++ Rsa1.0_00554.1_g00002.1 193 LRAKIA 198 ****97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 4.0E-38 | 27 | 86 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 32.071 | 27 | 87 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.44E-31 | 29 | 100 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.9E-32 | 29 | 49 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 29 | 83 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 5.11E-43 | 29 | 101 | No hit | No description |
Pfam | PF00319 | 4.2E-26 | 36 | 83 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.9E-32 | 49 | 64 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.9E-32 | 64 | 85 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 3.5E-27 | 111 | 197 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 15.15 | 113 | 203 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0048481 | Biological Process | plant ovule development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence Send to blast |
MFYSSGDIAE SMEEGGSSHD PESNKKLVRG KIEIKRIENT TSRQVTFCKR RNGLLKKAYE 60 LSVLCDAEVA LVVFSTRGRL YEYANNSVKG TIERYKKACS DAVNPPTVTE ANTQYYQQEA 120 SKLRRQIRDI QNSNRHIVGE SLGSLNFKEL KNLEGRLEKG ISRVRSKKNE LLVAEMEYMH 180 KREMELQHDN MYLRAKIAHC GRLDPEQQES SVIQGTAVYE SGLSSSHDQL QNYNRSYIPV 240 NLLEPNQQFS GQDQPPLQLV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1egw_A | 7e-18 | 29 | 95 | 2 | 68 | MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A |
1egw_B | 7e-18 | 29 | 95 | 2 | 68 | MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A |
1egw_C | 7e-18 | 29 | 95 | 2 | 68 | MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A |
1egw_D | 7e-18 | 29 | 95 | 2 | 68 | MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A |
1tqe_P | 9e-18 | 29 | 95 | 3 | 69 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 9e-18 | 29 | 95 | 3 | 69 | Myocyte-specific enhancer factor 2B |
1tqe_R | 9e-18 | 29 | 95 | 3 | 69 | Myocyte-specific enhancer factor 2B |
1tqe_S | 9e-18 | 29 | 95 | 3 | 69 | Myocyte-specific enhancer factor 2B |
3p57_A | 9e-18 | 29 | 95 | 2 | 68 | Myocyte-specific enhancer factor 2A |
3p57_B | 9e-18 | 29 | 95 | 2 | 68 | Myocyte-specific enhancer factor 2A |
3p57_C | 9e-18 | 29 | 95 | 2 | 68 | Myocyte-specific enhancer factor 2A |
3p57_D | 9e-18 | 29 | 95 | 2 | 68 | Myocyte-specific enhancer factor 2A |
3p57_I | 9e-18 | 29 | 95 | 2 | 68 | Myocyte-specific enhancer factor 2A |
3p57_J | 9e-18 | 29 | 95 | 2 | 68 | Myocyte-specific enhancer factor 2A |
6c9l_A | 9e-18 | 29 | 95 | 3 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_B | 9e-18 | 29 | 95 | 3 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_C | 9e-18 | 29 | 95 | 3 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_D | 9e-18 | 29 | 95 | 3 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_E | 9e-18 | 29 | 95 | 3 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_F | 9e-18 | 29 | 95 | 3 | 69 | Myocyte-specific enhancer factor 2B |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Interacts genetically with TT16/AGL32 in a partially antagonistic manner during flower development. Is essential for the coordination of cell divisions in ovule, seed coat development and endosperm formation (PubMed:27776173). {ECO:0000269|PubMed:27776173}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00093 | SELEX | Transfer from AT3G58780 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_00554.1_g00002.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JQ973084 | 0.0 | JQ973084.1 Brassica napus Shatterproof (SHP1a) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009138935.1 | 1e-176 | PREDICTED: agamous-like MADS-box protein AGL1 | ||||
Refseq | XP_013746379.1 | 1e-176 | agamous-like MADS-box protein AGL1 | ||||
Refseq | XP_022573603.1 | 1e-176 | agamous-like MADS-box protein AGL1 | ||||
Swissprot | P29381 | 1e-168 | AGL1_ARATH; Agamous-like MADS-box protein AGL1 | ||||
TrEMBL | A0A397ZQU6 | 1e-175 | A0A397ZQU6_BRACM; Uncharacterized protein | ||||
TrEMBL | M4DDI4 | 1e-175 | M4DDI4_BRARP; Uncharacterized protein | ||||
STRING | Bra014552.1-P | 1e-176 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3341 | 23 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G58780.1 | 1e-170 | MIKC_MADS family protein |
Publications ? help Back to Top | |||
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