PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_00551.1_g00002.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

G2-like

Protein Properties

Length: 282aa MW: 30494.9 Da PI: 4.7607

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_00551.1_g00002.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	101.3	6.3e-32	189	243	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr+rW+peLH++F+eav++L G+ekAtPk+++++m+v+gLt+++vkSHLQkYRl Rsa1.0_00551.1_g00002.1 189 KPRMRWSPELHDCFLEAVKKLDGPEKATPKAVMKMMNVEGLTIYQVKSHLQKYRL 243 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.9E-30	187	244	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.94E-18	188	244	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.3E-25	189	244	IPR006447	Myb domain, plants
Pfam	PF00249	1.7E-10	191	242	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 282 aa Download sequence Send to blast
MNSHSLFLSI NDGGNTTCCS SSSLASLHSE TTRSFPFRPS HFSNGSSFSR SSAFCNLSSS 60 SSSDTKKHLG STLPFLPNPS PAAASFTFTE EDLLSFSFEE VVDTSFLALS GDGGFQDVVD 120 NFSLSEEQME LQFLSDELQL AITDRGETPR LDEIYQVTGL SPGQNGLPTA MPVLSQQPSP 180 GESAAVNQKP RMRWSPELHD CFLEAVKKLD GPEKATPKAV MKMMNVEGLT IYQVKSHLQK 240 YRLAKNMPER KEGKAQGNVP SIFDTLSTDG TTLTASDSAP GT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-23	189	245	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-23	189	245	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	1e-23	189	245	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-23	189	245	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-23	189	245	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-23	189	245	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-23	189	245	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-23	189	245	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-23	189	245	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-23	189	245	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-23	189	245	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-23	189	245	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_00551.1_g00002.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018485277.1	0.0	PREDICTED: myb family transcription factor PHL6-like
Swissprot	Q949U2	5e-69	PHL6_ARATH; Myb family transcription factor PHL6
TrEMBL	A0A078JPH1	1e-129	A0A078JPH1_BRANA; BnaCnng55690D protein
TrEMBL	A0A3P6GLR7	1e-129	A0A3P6GLR7_BRAOL; Uncharacterized protein
STRING	Bo6g035910.1	1e-129	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM19136	6	7

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13040.2	7e-68	G2-like family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Nguyen HT, et al. A Transcription Factor γMYB1 Binds to the P1BS cis-Element and Activates PLA2-γ Expression with its Co-Activator γMYB2. Plant Cell Physiol., 2016. 57(4): p. 784-97 [PMID:26872838]