PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00549.1_g00012.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C3H
Protein Properties Length: 412aa    MW: 44908.6 Da    PI: 4.7126
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00549.1_g00012.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.38.7e-06360382426
                              ---SGGGGTS--TTTTT-SS-SS CS
                  zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                              ++C++f  +  C+ G++C F H+
  Rsa1.0_00549.1_g00012.1 360 KPCMYFNSSRGCRNGANCLFQHD 382
                              69********************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010311.995356384IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-4360383IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.14E-5361387IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MRALHKSKRV SWPPDFKLCQ VRLFISEDSP SQVGSESQDH LQAKSHPSED NLPPGFGGPL  60
SANEPQIKLS DIPVIKWICS VRIVLDEEWR VVAGEESKEV ETQNQRELRV LEAFYPGASA  120
IPPNPSVLAD VDNSDYDDQQ TVVIPILPVE DDDIDPASDL PVQSGVDVVG TEPSRSDENT  180
SVSSTLPAAS EIMAALTAIS NNKELGSGMI DQELLMKILS NPKLVENLVA NSSGAGSVSS  240
NAGSLYLSST HEANGVTTST PASSNGQYYP QPTPSLVYPP PTSSDQPNYG APPARDASYY  300
KSLIQQHGGE RQEAPPPVQQ HLGYRYNNPQ PGGGLNPEMV NSNNNNNQRP PRDSKQKIMK  360
PCMYFNSSRG CRNGANCLFQ HDATAYQPRN PNNGNTNNPE MQTAKRMRFD RD
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00549.1_g00012.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894050.0AC189405.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB058M10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018449497.10.0PREDICTED: zinc finger CCCH domain-containing protein 6-like
SwissprotQ56XU40.0C3H6_ARATH; Zinc finger CCCH domain-containing protein 6
TrEMBLA0A078JCT60.0A0A078JCT6_BRANA; BnaA08g31260D protein
STRINGBo8g069830.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56141418
Publications ? help Back to Top
  1. Mastrangelo AM, et al.
    Low temperature promotes intron retention in two e-cor genes of durum wheat.
    Planta, 2005. 221(5): p. 705-15
    [PMID:15666155]