PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Rsa1.0_00548.1_g00003.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
|
||||||||
Family | GeBP | ||||||||
Protein Properties | Length: 153aa MW: 17121.9 Da PI: 5.0719 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 66.4 | 6.6e-21 | 78 | 148 | 24 | 97 |
DUF573 24 aktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 +++gk+p++d +ye +k+s s++++ +q++eKir++++K++ k+ + g++ s s++h+qk+f+lsk iWg Rsa1.0_00548.1_g00003.1 78 DTKGKNPVQDNRPLYESMKGSFSSDITLRQFSEKIRNMRRKYTAKEMR---GEQASASNPHQQKCFQLSKAIWG 148 579*******************************************99...**********************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 3.3E-18 | 78 | 148 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 153 aa Download sequence Send to blast |
MANNLKHPLE DPPSISSSAG DFLFISSQEE DEEEDQHTIF SSDEGEPEDP PLRSSSEAKL 60 PGRKLRSGGI STNVTIIDTK GKNPVQDNRP LYESMKGSFS SDITLRQFSE KIRNMRRKYT 120 AKEMRGEQAS ASNPHQQKCF QLSKAIWGVD SEC |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Rsa1.0_00548.1_g00003.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009139867.1 | 4e-73 | PREDICTED: probable transcription factor At1g66420 | ||||
Refseq | XP_013745191.1 | 4e-73 | probable transcription factor At1g66420 | ||||
TrEMBL | A0A3P6CNB0 | 1e-68 | A0A3P6CNB0_BRACM; Uncharacterized protein | ||||
TrEMBL | M4EH40 | 8e-69 | M4EH40_BRARP; Uncharacterized protein | ||||
STRING | Bra028105.1-P | 1e-69 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13542 | 7 | 21 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G61730.1 | 5e-13 | DNA-binding storekeeper protein-related transcriptional regulator |