PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_00547.1_g00008.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | Dof | ||||||||
Protein Properties | Length: 337aa MW: 36467.9 Da PI: 8.1853 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 125.5 | 1.7e-39 | 44 | 104 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 k++a++cprC+stntkfCyynnysl+qPr+fCk+CrryWt+GG+lrn+PvGgg+rknk+s+ Rsa1.0_00547.1_g00008.1 44 KDQAINCPRCNSTNTKFCYYNNYSLTQPRFFCKGCRRYWTEGGSLRNIPVGGGSRKNKRSH 104 7899******************************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 1.0E-27 | 37 | 96 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 4.4E-33 | 45 | 102 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.537 | 48 | 102 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 50 | 86 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 337 aa Download sequence Send to blast |
MVVKPLEEIV TNTCPKPQSA AHTQQPPSVG AGGGGAERKA RPEKDQAINC PRCNSTNTKF 60 CYYNNYSLTQ PRFFCKGCRR YWTEGGSLRN IPVGGGSRKN KRSHSSSVSS SSDINTNHSD 120 STQPATKKHH SDHHHLMSIS QQRLTGQNPK FFETTQQDLN LGFPPHGLIR SNFTDLIHNI 180 GNNNIKSTNN PLLSSSCSST SAMATSSLDL IRNNNSNNGS SSFMGFPVQN QDPTSGGFSM 240 QDHYKPCNSN TTLLGFSLDH HHNNGFHGGF QEGEEAAGDD VNGRHLFPFE DLKLPVSSSS 300 ATINVDINDN QKRASGGDAS ATSGGYWTGM LSGGSWC |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_00547.1_g00008.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ358088 | 0.0 | DQ358088.1 Brassica juncea sporocyteless (SPL) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018469941.1 | 0.0 | PREDICTED: dof zinc finger protein DOF4.6-like | ||||
Swissprot | Q8LAP8 | 1e-168 | DOF46_ARATH; Dof zinc finger protein DOF4.6 | ||||
TrEMBL | A0A398ALR3 | 0.0 | A0A398ALR3_BRACM; Uncharacterized protein | ||||
TrEMBL | A0A3P5ZFK1 | 0.0 | A0A3P5ZFK1_BRACM; Uncharacterized protein | ||||
STRING | Bra013758.1-P | 0.0 | (Brassica rapa) | ||||
STRING | Bo1g037500.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3433 | 27 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24060.1 | 1e-129 | Dof family protein |
Publications ? help Back to Top | |||
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