PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_00547.1_g00003.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

Nin-like

Protein Properties

Length: 970aa MW: 107232 Da PI: 5.5339

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_00547.1_g00003.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	91.8	5e-29	597	647	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+isl++l++yF +++kdAAk+Lgvc+T++KriCRq+GI+RWP+Rkik++ Rsa1.0_00547.1_g00003.1 597 EKTISLDVLQQYFTGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKIKKV 647 799**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF55781	4.76E-5	214	281	IPR029016	GAF domain-like
PROSITE profile	PS51519	17.393	586	667	IPR003035	RWP-RK domain
Pfam	PF02042	7.4E-26	599	647	IPR003035	RWP-RK domain
SuperFamily	SSF54277	1.57E-23	867	958	No hit	No description
Pfam	PF00564	3.4E-20	874	955	IPR000270	PB1 domain
SMART	SM00666	5.2E-29	874	956	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	6.6E-27	874	956	No hit	No description
PROSITE profile	PS51745	28.012	874	956	IPR000270	PB1 domain
CDD	cd06407	5.78E-35	875	955	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009414	Biological Process	response to water deprivation
GO:0010118	Biological Process	stomatal movement
GO:0010167	Biological Process	response to nitrate
GO:0042128	Biological Process	nitrate assimilation
GO:0005634	Cellular Component	nucleus
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 970 aa Download sequence Send to blast
MCEPDDNTTA RNGVTPPPSR SRELLMDVDD LDLDGSWPLD QIPYLSSSNR MISPIFVSSS 60 SEQPCSPLWA FSDAVGGTVN HGGDDEKISS ASGVPSFRLS DYPLFLPYSS SPSVAENTTE 120 KHNGFQFPSP LMSLVPPENT DNYCVIKERM TQALRYFKES TEQHVLAQVW APVRKNGRDL 180 LTTLGQPFVL NPNGNGLNQY RMISLTYMFS VDSESDFELG LPGRVFRQKL PEWTPNVQYY 240 SSKEFSRLDH ALHYNVRGTL ALPVFNPSGE SCIGVVELIM TSEKIHYAPE VDRVCKALEF 300 NKIWSFWQAV NLKSSEILDH QTTQICNESR QNALAEILEV LTVVCETHNL PLAQTWVPCQ 360 HGSVLANGGG LKKNCTSFDG SCMGQVCMST TDMACYVVDA HVWGFRDACL EHHLQKGQGV 420 AGRAFLNGGS CFCRDITKFC KTQYPLVHYA LMFKLTTCFA ISLQSSYTGD DSYILEFFLP 480 SSITDNQEQD SLLGSLLVTM KEHFQSLRVA SGVDFGEDDD KLSFEIIEAL PDKKIHSQIE 540 SIRVPFSGFK SNATETLLIP QPAVPSSDHV NGKTNVAPVN GVVKEKKKTE KKRGKTEKTI 600 SLDVLQQYFT GSLKDAAKSL GVCPTTMKRI CRQHGISRWP SRKIKKVNRS ITKLKRVIES 660 VQCTDGGLDL TSMAVSSIPW THGQTAAQQL NSPSGSKPPE LPTTNNSPNH WSNEHSPPEP 720 NGSPELPSNG HKRSRTADES AGTPTSHGSC DGNGNQLDET KVPSQDPLFT VGGGPPGLFF 780 PPYSRDHDVS AASFAMPNRL LGTIDHFRGM PIEDAGSSKD LRNLCSTAAF EDKFPDSNWM 840 NNDNNSNNNM YVPPKEEEVA NITREPPSES EMRTVTIKAS YKEDIIRFRI PSGSGITELK 900 DEVAKRLRID AGTFDIKYLD DDNEWVLIAC DADLQECLEI PRSSRTNIVR LLVHDVTANL 960 GSSCESTGEL

Sequence ? help Back to Top

Protein Sequence Length: 970 aa Download sequence Send to blast

MCEPDDNTTA RNGVTPPPSR SRELLMDVDD LDLDGSWPLD QIPYLSSSNR MISPIFVSSS  60
SEQPCSPLWA FSDAVGGTVN HGGDDEKISS ASGVPSFRLS DYPLFLPYSS SPSVAENTTE  120
KHNGFQFPSP LMSLVPPENT DNYCVIKERM TQALRYFKES TEQHVLAQVW APVRKNGRDL  180
LTTLGQPFVL NPNGNGLNQY RMISLTYMFS VDSESDFELG LPGRVFRQKL PEWTPNVQYY  240
SSKEFSRLDH ALHYNVRGTL ALPVFNPSGE SCIGVVELIM TSEKIHYAPE VDRVCKALEF  300
NKIWSFWQAV NLKSSEILDH QTTQICNESR QNALAEILEV LTVVCETHNL PLAQTWVPCQ  360
HGSVLANGGG LKKNCTSFDG SCMGQVCMST TDMACYVVDA HVWGFRDACL EHHLQKGQGV  420
AGRAFLNGGS CFCRDITKFC KTQYPLVHYA LMFKLTTCFA ISLQSSYTGD DSYILEFFLP  480
SSITDNQEQD SLLGSLLVTM KEHFQSLRVA SGVDFGEDDD KLSFEIIEAL PDKKIHSQIE  540
SIRVPFSGFK SNATETLLIP QPAVPSSDHV NGKTNVAPVN GVVKEKKKTE KKRGKTEKTI  600
SLDVLQQYFT GSLKDAAKSL GVCPTTMKRI CRQHGISRWP SRKIKKVNRS ITKLKRVIES  660
VQCTDGGLDL TSMAVSSIPW THGQTAAQQL NSPSGSKPPE LPTTNNSPNH WSNEHSPPEP  720
NGSPELPSNG HKRSRTADES AGTPTSHGSC DGNGNQLDET KVPSQDPLFT VGGGPPGLFF  780
PPYSRDHDVS AASFAMPNRL LGTIDHFRGM PIEDAGSSKD LRNLCSTAAF EDKFPDSNWM  840
NNDNNSNNNM YVPPKEEEVA NITREPPSES EMRTVTIKAS YKEDIIRFRI PSGSGITELK  900
DEVAKRLRID AGTFDIKYLD DDNEWVLIAC DADLQECLEI PRSSRTNIVR LLVHDVTANL  960
GSSCESTGEL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in regulation of nitrate assimilation and in transduction of the nitrate signal. {ECO:0000269\|PubMed:18826430}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00449	DAP	Transfer from AT4G24020	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_00547.1_g00003.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not regulated by the N source or by nitrate. {ECO:0000269\|PubMed:18826430}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK228452	0.0	AK228452.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL15-03-P13.
GenBank	BT005776	0.0	BT005776.1 Arabidopsis thaliana clone RAFL15-03-P13 (R20174) unknown protein (At4g24020) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018469935.1	0.0	PREDICTED: protein NLP7
Swissprot	Q84TH9	0.0	NLP7_ARATH; Protein NLP7
TrEMBL	M4DB94	0.0	M4DB94_BRARP; Uncharacterized protein
STRING	Bra013754.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2507	26	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	0.0	NIN like protein 7

Publications ? help Back to Top
Xu N, et al. The Arabidopsis NRG2 Protein Mediates Nitrate Signaling and Interacts with and Regulates Key Nitrate Regulators. Plant Cell, 2016. 28(2): p. 485-504 [PMID:26744214] Karve R,Suárez-Román F,Iyer-Pascuzzi AS The Transcription Factor NIN-LIKE PROTEIN7 Controls Border-Like Cell Release. Plant Physiol., 2016. 171(3): p. 2101-11 [PMID:27221617] Yu LH, et al. Overexpression of Arabidopsis NLP7 improves plant growth under both nitrogen-limiting and -sufficient conditions by enhancing nitrogen and carbon assimilation. Sci Rep, 2016. 6: p. 27795 [PMID:27293103] Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465] Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416] Guan P, et al. Interacting TCP and NLP transcription factors control plant responses to nitrate availability. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424 [PMID:28202720] Liu KH, et al. Discovery of nitrate-CPK-NLP signalling in central nutrient-growth networks. Nature, 2017. 545(7654): p. 311-316 [PMID:28489820] Li Z, et al. The Arabidopsis CPSF30-L gene plays an essential role in nitrate signaling and regulates the nitrate transceptor gene NRT1.1. New Phytol., 2017. 216(4): p. 1205-1222 [PMID:28850721] Cao H, et al. Overexpression of the Maize ZmNLP6 and ZmNLP8 Can Complement the Arabidopsis Nitrate Regulatory Mutant nlp7 by Restoring Nitrate Signaling and Assimilation. Front Plant Sci, 2017. 8: p. 1703 [PMID:29051766] Konishi N,Okubo T,Yamaya T,Hayakawa T,Minamisawa K Nitrate Supply-Dependent Shifts in Communities of Root-Associated Bacteria in Arabidopsis. Microbes Environ., 2017. 32(4): p. 314-323 [PMID:29187692] Karve RA,Iyer-Pascuzzi AS Further insights into the role of NIN-LIKE PROTEIN 7 (NLP7) in root cap cell release. Plant Signal Behav, 2018. 13(1): p. e1414122 [PMID:29215953] Zhao L, et al. The Arabidopsis NLP7 gene regulates nitrate signaling via NRT1.1-dependent pathway in the presence of ammonium. Sci Rep, 2018. 8(1): p. 1487 [PMID:29367694]