PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_00544.1_g00004.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | NAC | ||||||||
Protein Properties | Length: 485aa MW: 54562.2 Da PI: 5.6884 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 157 | 8e-49 | 28 | 188 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk...................................kv 51 l+pGfrFhPtdeelv++yLk+kv gk++++ ++i +vdiyk+ePwdL ++ Rsa1.0_00544.1_g00004.1 28 LAPGFRFHPTDEELVSYYLKRKVMGKPVRF-DAIGDVDIYKHEPWDLAGnevcyslfgfefsvlsqdmkfvvaclteylkfvfsRL 112 579************************999.99**************84489***************************9999988 PP NAM 52 kaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 k++++ewyf+s dkky +g r nrat++gyWkatgkd+e+ + + +l g+kktLvf++grap+g +t+Wvmheyrl Rsa1.0_00544.1_g00004.1 113 KTRDQEWYFYSALDKKYGNGARMNRATNKGYWKATGKDREIRR-DIQLLGMKKTLVFHSGRAPDGLRTNWVMHEYRL 188 8899**************************************9.999****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.44E-18 | 21 | 79 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 52.815 | 28 | 212 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.2E-26 | 30 | 188 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 4.58E-36 | 111 | 213 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009555 | Biological Process | pollen development | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 485 aa Download sequence Send to blast |
MGRESVAVVS SPPTATPRGT TAVAGTSLAP GFRFHPTDEE LVSYYLKRKV MGKPVRFDAI 60 GDVDIYKHEP WDLAGNEVCY SLFGFEFSVL SQDMKFVVAC LTEYLKFVFS RLKTRDQEWY 120 FYSALDKKYG NGARMNRATN KGYWKATGKD REIRRDIQLL GMKKTLVFHS GRAPDGLRTN 180 WVMHEYRLVD YETESNGNLV QDAYVLCRVF HKNNIGPPSG NRYAPFLEEE WADDGVALIP 240 GVDVRVRAEP LPLANGNNQM DQSASKDLIN INEPPRETAP MDIELNHQNH HENAPKTQEN 300 NHYDEAEEAL KLEQAEEDER PPPPPVCVIN KEAPLPLLQY KRRRQNEPNN NSSRTTQDHC 360 SSTTTTVDNT PPTALISSSS AAAATNTAIS ALLEFSLMGI SAKKENQQQP PNKEASPPAP 420 LPSPEEKLND LQKEVHQMSV ERETFKLEMM SAEAMISILQ SRIDALRQEN DELRKNNNAK 480 GQAVL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 1e-42 | 20 | 214 | 12 | 170 | NAC domain-containing protein 19 |
3swm_B | 1e-42 | 20 | 214 | 12 | 170 | NAC domain-containing protein 19 |
3swm_C | 1e-42 | 20 | 214 | 12 | 170 | NAC domain-containing protein 19 |
3swm_D | 1e-42 | 20 | 214 | 12 | 170 | NAC domain-containing protein 19 |
3swp_A | 1e-42 | 20 | 214 | 12 | 170 | NAC domain-containing protein 19 |
3swp_B | 1e-42 | 20 | 214 | 12 | 170 | NAC domain-containing protein 19 |
3swp_C | 1e-42 | 20 | 214 | 12 | 170 | NAC domain-containing protein 19 |
3swp_D | 1e-42 | 20 | 214 | 12 | 170 | NAC domain-containing protein 19 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional repressor that binds to the motif 5'-(C/T)A(C/A)G-3' in the promoter of target genes (PubMed:25578968). Binds also to the 5'-CTTGNNNNNCAAG-3' consensus sequence in chromatin (PubMed:26617990). Can bind to the mitochondrial dysfunction motif (MDM) present in the upstream regions of mitochondrial dysfunction stimulon (MDS) genes involved in mitochondrial retrograde regulation (MRR) (PubMed:24045019). Together with NAC050 and JMJ14, regulates gene expression and flowering time by associating with the histone demethylase JMJ14, probably by the promotion of RNA-mediated gene silencing (PubMed:25578968, PubMed:26617990). Regulates siRNA-dependent post-transcriptional gene silencing (PTGS) through SGS3 expression modulation (PubMed:28207953). Required during pollen development (PubMed:19237690). {ECO:0000269|PubMed:19237690, ECO:0000269|PubMed:24045019, ECO:0000269|PubMed:25578968, ECO:0000269|PubMed:26617990, ECO:0000269|PubMed:28207953}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00612 | ChIP-seq | Transfer from AT3G10490 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_00544.1_g00004.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by type III effector proteins (TTEs) secreted by the pathogenic bacteria P.syringae pv. tomato DC3000 during basal defense. {ECO:0000269|PubMed:16553893}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013750306.1 | 0.0 | NAC domain-containing protein 78-like isoform X3 | ||||
Swissprot | Q9SQY0 | 0.0 | NAC52_ARATH; NAC domain containing protein 52 | ||||
TrEMBL | A0A3P6FBP6 | 0.0 | A0A3P6FBP6_BRAOL; Uncharacterized protein | ||||
STRING | Bo5g137360.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1780 | 28 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G10480.1 | 0.0 | NAC domain containing protein 50 |
Publications ? help Back to Top | |||
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