PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00533.1_g00018.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family HD-ZIP
Protein Properties Length: 686aa    MW: 76451.8 Da    PI: 7.1014
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00533.1_g00018.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.62.4e-192071556
                             SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                 Homeobox  5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                             +++t++q+++Le+ F+++++p++++r +L+k+lgL  rq+k+WFqNrR+++k
  Rsa1.0_00533.1_g00018.1 20 HRHTPHQIHRLESSFNECQHPDEKQRLQLSKELGLAPRQIKFWFQNRRTQKK 71
                             679**********************************************988 PP
2START128.29.6e-412124242206
                              HHHHHHHHHHHHHHHC-TT-EEEE...EXCCTTEEEEEEESSS..SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEE CS
                    START   2 laeeaaqelvkkalaeepgWvkss...esengdevlqkfeeskv.dsgealrasgvvdmvlallveellddkeqWdetlakaetle 83 
                              +a +a++e++++ + +ep+W +     + +n + +   f++s +   g+   + +  +  +++ +++ ++++  ++  +a+ +tl+
  Rsa1.0_00533.1_g00018.1 212 IAVTAMEEFLRLTQTNEPLWIRTNgcrDVLNLQSYENMFPRSSSrGGGKNHNLRKEATRSSVDMLMDSVKSSDLFSSVVASSKTLA 297
                              6889********************9998888888888888877765677777777777888888888888888************* PP

                              EECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEE CS
                    START  84 vissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghs 162
                              v+ssg       al+lm  elq+lsplvp R+f ++Ry +q + g+w+iv vS + +q+ + +    R+ ++pSg+li+++sng+s
  Rsa1.0_00533.1_g00018.1 298 VVSSGmrgshgDALHLMLEELQVLSPLVPtREFSVLRYYQQIEHGTWAIVNVSYELPQFIS-H---SRSYRFPSGCLIQDLSNGYS 379
                              **********9************************************************98.4...56666*************** PP

                              EEEEEE-EE--SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
                    START 163 kvtwvehvdlkgrlp.hwllrslvksglaegaktwvatlqrqcek 206
                              kvtwvehv+++++ p h++++  ++ g+a+ga +w atlqr ce+
  Rsa1.0_00533.1_g00018.1 380 KVTWVEHVEVEEQEPvHAMFKDNIREGIAFGAERWIATLQRMCER 424
                              *******************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.7E-20767IPR009057Homeodomain-like
SuperFamilySSF466898.77E-19976IPR009057Homeodomain-like
PROSITE profilePS5007117.2321373IPR001356Homeobox domain
SMARTSM003891.2E-181477IPR001356Homeobox domain
CDDcd000861.94E-181674No hitNo description
PfamPF000466.5E-172071IPR001356Homeobox domain
PROSITE patternPS0002704871IPR017970Homeobox, conserved site
PROSITE profilePS5084843.642202427IPR002913START domain
SuperFamilySSF559615.89E-25203425No hitNo description
CDDcd088752.21E-76206423No hitNo description
SMARTSM002341.5E-27211424IPR002913START domain
PfamPF018526.0E-33212424IPR002913START domain
Gene3DG3DSA:3.30.530.201.7E-4275390IPR023393START-like domain
SuperFamilySSF559617.33E-19445647No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010091Biological Processtrichome branching
GO:0048497Biological Processmaintenance of floral organ identity
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 686 aa     Download sequence    Send to blast
MEFLGDSSET DKKKMKKRFH RHTPHQIHRL ESSFNECQHP DEKQRLQLSK ELGLAPRQIK  60
FWFQNRRTQK KAQHERADNC ALKEENDRIR FENIAIREAI KRAICLNCGD APLHEDSYFD  120
EQKLRIENAH LREELERVSS IAAKFMGRPP LSHLPPLLNP MHVSPSELFH SGPSLDFDLL  180
PGSSSSSITV PTLPSQPNLV LSDMDKSLMT NIAVTAMEEF LRLTQTNEPL WIRTNGCRDV  240
LNLQSYENMF PRSSSRGGGK NHNLRKEATR SSVDMLMDSV KSSDLFSSVV ASSKTLAVVS  300
SGMRGSHGDA LHLMLEELQV LSPLVPTREF SVLRYYQQIE HGTWAIVNVS YELPQFISHS  360
RSYRFPSGCL IQDLSNGYSK VTWVEHVEVE EQEPVHAMFK DNIREGIAFG AERWIATLQR  420
MCERFTALLE PATSSRDLKG VIPSPEGKQS IMRLAQRMVS NFCLSVGTSN NTRSTVVSGL  480
DAFGIRVTSY KSMHEPNGMV LCAATSFWLP VSPQRVFNFL KDEKTRPQWD VLLDGNSVQE  540
VAHIANGSHP GNCISVLRGF NASSSQNNML ILQESCIDSS GSLVVYTPVD LPALNMAMTG  600
QDTSYIPILP SGFAILPEGV RNNQTTEIKS EGGGGGGGSL ITVGFQIMVS SLQSGKLNME  660
SMETVNNLIS TTVHQIKTTL NSPSTA
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that acts as negative regulator of trichome branching in association with HDG11 (PubMed:16778018). May regulate cell differentiation and proliferation during root and shoot meristem development (PubMed:25564655). Acts as positive regulator of SCL18/LAS expression (PubMed:25358340). {ECO:0000269|PubMed:16778018, ECO:0000269|PubMed:25358340, ECO:0000269|PubMed:25564655}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00533.1_g00018.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013641731.10.0homeobox-leucine zipper protein HDG12-like
RefseqXP_022542958.10.0homeobox-leucine zipper protein HDG12-like
SwissprotQ9LMT80.0HDG12_ARATH; Homeobox-leucine zipper protein HDG12
TrEMBLA0A397Z1A90.0A0A397Z1A9_BRACM; Uncharacterized protein
STRINGBra025938.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30042665
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17920.10.0homeodomain GLABROUS 12
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Tian C, et al.
    An organ boundary-enriched gene regulatory network uncovers regulatory hierarchies underlying axillary meristem initiation.
    Mol. Syst. Biol., 2014. 10: p. 755
    [PMID:25358340]
  3. Horstman A, et al.
    AIL and HDG proteins act antagonistically to control cell proliferation.
    Development, 2015. 142(3): p. 454-64
    [PMID:25564655]