PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00527.1_g00006.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family G2-like
Protein Properties Length: 326aa    MW: 37482.3 Da    PI: 8.4843
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00527.1_g00006.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like962.7e-30193247256
                  G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                              +r+rW+++LH+rFv+a++++GGs++AtPk+i++ m v+gLt+++vkSHLQkYR++
  Rsa1.0_00527.1_g00006.1 193 QRRRWSQDLHRRFVDALQRIGGSQVATPKQIRDEMRVDGLTNDEVKSHLQKYRMH 247
                              8****************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.786189249IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.3E-26190250IPR009057Homeodomain-like
SuperFamilySSF466894.75E-16190250IPR009057Homeodomain-like
TIGRFAMsTIGR015578.5E-25193247IPR006447Myb domain, plants
PfamPF002491.6E-6194245IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MSLNLNISLY SLEKPLSQFL DQVSKIKDNH SKLSEIDGYV GKLEDERKKI DVFKRELPLC  60
MLLLNEAIER LKEEASSVMM ASNGRFDVGQ GAKLETDNKK NWMSSAQLWI SNSNSTNREE  120
DRGVTQTPFQ TCYNLNQRGV FMPFNPPPPV PLSLMTPPSE SDMMMRECSR IEQNHQLNRP  180
IQSHHHHIPK KEQRRRWSQD LHRRFVDALQ RIGGSQVATP KQIRDEMRVD GLTNDEVKSH  240
LQKYRMHIRK HPGKTLLSLD QPGLLGRETQ SLISLSRSDS PQSPLVDREL FSNNGGHSSE  300
GEEEEEKSDG RSWKSESDKK RQVLSL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1188194PKKEQRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that functions with ULT1 in a pathway which regulates floral meristem homeostasis and organ number in the flower. Binds specifically to the DNA sequence motif 5'-GTAGATTCCT-3' of WUS promoter, and may be involved in direct regulation of WUS expression. Binds specifically to the DNA sequence motif 5'-AAGAATCTTT-3' found in the promoters of AG and the NAC domain genes CUC1, CUC2 and CUC3, and may be involved in direct regulation of these gene expressions.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00527.1_g00006.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ9738391e-103DQ973839.1 Brassica napus clone PBCESTNA15 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018450124.10.0PREDICTED: myb family transcription factor EFM-like
SwissprotF4JRB01e-145HHO5_ARATH; Transcription factor HHO5
TrEMBLA0A078I1W80.0A0A078I1W8_BRANA; BnaA08g15490D protein
TrEMBLA0A397YDQ30.0A0A397YDQ3_BRACM; Uncharacterized protein
STRINGBra010581.1-P1e-170(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49222652
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37180.11e-133G2-like family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Nagarajan VK,Satheesh V,Poling MD,Raghothama KG,Jain A
    Arabidopsis MYB-Related HHO2 Exerts a Regulatory Influence on a Subset of Root Traits and Genes Governing Phosphate Homeostasis.
    Plant Cell Physiol., 2016. 57(6): p. 1142-52
    [PMID:27016098]