PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_00527.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | TALE | ||||||||
Protein Properties | Length: 668aa MW: 73938.6 Da PI: 7.2486 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 28.7 | 2.2e-09 | 466 | 503 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yps +++ LA+++gL+ +qV++WF N R + Rsa1.0_00527.1_g00001.1 466 FEHflHPYPSDADKHLLARQTGLSRNQVSNWFINARVR 503 664559******************************88 PP | |||||||
2 | BELL | 121.5 | 3.7e-39 | 324 | 395 | 1 | 72 |
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 +r e+q++k+kLl +leeVd+rY++y+eq+q+v++sF++v+g+g+a pYt+lA+ka+SrhFrcLkda+a q+ Rsa1.0_00527.1_g00001.1 324 DRIEHQRRKVKLLAMLEEVDRRYNHYCEQMQMVVNSFDIVMGHGAALPYTALAQKAMSRHFRCLKDAVAAQL 395 589******************************************************************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 2.3E-77 | 257 | 393 | IPR006563 | POX domain |
Pfam | PF07526 | 1.4E-49 | 262 | 392 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.568 | 444 | 507 | IPR001356 | Homeobox domain |
CDD | cd00086 | 7.35E-12 | 447 | 508 | No hit | No description |
SMART | SM00389 | 1.2E-9 | 447 | 511 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 2.91E-17 | 448 | 514 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 7.7E-29 | 450 | 513 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 3.3E-18 | 464 | 503 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 668 aa Download sequence Send to blast |
MSQDYHHHHH QQHQGGIFSF SNGFDRLDST SLTTQQKQEH QRVKMDEESS VAGSGIPVYE 60 TAGILSDMFN FPGSSGAVGG GDPNHDQSFR SNRQFLEKQH DQNIPANSAA AMQLFLMNPP 120 PPQQPLSPSS TTSTRSHHNN SSTLHMLLPN PSHQQGYTST MSMHQIPHQH QEQLTWQSSS 180 SSDHHHHHHY NSQTEIGTIH SGGQGLSLSL SSSLEAAAKA EEYRNIYYGN KTTLLADYPQ 240 HHLRSSPAVA AASSSTAGAI NILRSSRYTK AAQELLEEFC TVGRGFSKKN KLRNSSNPNT 300 SGGDGGSPSS AGAIKDQPPL SASDRIEHQR RKVKLLAMLE EVDRRYNHYC EQMQMVVNSF 360 DIVMGHGAAL PYTALAQKAM SRHFRCLKDA VAAQLRQICE LLGDKDAAGI SSSGLTKGET 420 PRLRLLEQSL RQQRAFHQMG MMEQEAWRPQ RGLPERSVNI LRAWLFEHFL HPYPSDADKH 480 LLARQTGLSR NQVSNWFINA RVRLWKPMVE EMYQQESKER EREALEESEQ DQEPRNNNND 540 KSTKSNNNDS NLTPVRTTSQ TSMTAAQSAT TAPEAGVATG HRLRSSDINA YENDPSSSYT 600 NVAAVSSYAG PTAFSAVATC QKGIGGFDDT NMDGDNVISF GTNPTGDVSL TLGLRHVSNM 660 PDQRFLLR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3k2a_A | 1e-16 | 453 | 511 | 5 | 63 | Homeobox protein Meis2 |
3k2a_B | 1e-16 | 453 | 511 | 5 | 63 | Homeobox protein Meis2 |
4xrm_A | 2e-16 | 453 | 511 | 5 | 63 | Homeobox protein Meis2 |
4xrm_B | 2e-16 | 453 | 511 | 5 | 63 | Homeobox protein Meis2 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf. Negatively regulates knox homeobox gene KNAT1/BP expression. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_00527.1_g00001.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF173816 | 0.0 | AF173816.1 Arabidopsis thaliana bel1-like homeodomain 2 (BLH2) mRNA, complete cds. | |||
GenBank | AY050459 | 0.0 | AY050459.1 Arabidopsis thaliana AT4g36870/C7A10_490 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018447383.1 | 0.0 | PREDICTED: BEL1-like homeodomain protein 2 | ||||
Swissprot | Q9SW80 | 0.0 | BLH2_ARATH; BEL1-like homeodomain protein 2 | ||||
TrEMBL | A0A397YM21 | 0.0 | A0A397YM21_BRACM; Uncharacterized protein | ||||
STRING | Bo3g153820.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2166 | 24 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36870.2 | 0.0 | BEL1-like homeodomain 2 |
Publications ? help Back to Top | |||
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