PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00516.1_g00016.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family M-type_MADS
Protein Properties Length: 290aa    MW: 32747.8 Da    PI: 5.3855
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00516.1_g00016.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF63.22.8e-201462250
                             ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
                   SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                             +++++s + +++  R+ +i+KKA+EL +LCd+e++vi ++++g+l++++
  Rsa1.0_00516.1_g00016.1 14 PSSSYSLAATSLNSRLLTIFKKAQELTTLCDIEACVIHYGPDGELRTWP 62
                             689*********************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500669.3492365IPR002100Transcription factor, MADS-box
SuperFamilySSF554559.94E-142697IPR002100Transcription factor, MADS-box
PfamPF003192.8E-102761IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MRPPLSSSFS NSSPSSSYSL AATSLNSRLL TIFKKAQELT TLCDIEACVI HYGPDGELRT  60
WPENRDKVRD LALRYIQLDE AKRRKKSLNL YEFLNKNKKT TTMANNFKKK NVEELKYPIS  120
DHYSLDQINQ IIQSLELSYS TLQERRRFLA AKANLEDRQH LGTQSSNPSQ FTELLIGNMC  180
MGNNFQDPCV SSNTQDYSVF PLELQESVSN YGLNQLMQHE LYVFDQNMCM GDTTNINNAQ  240
DPCLSNLVSD DFCFGLQDPY GGKSGNPSFS QGFPDMLSSC VCQASTLPSL
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305|PubMed:26462908}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00516.1_g00016.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018479653.10.0PREDICTED: agamous-like MADS-box protein AGL75, partial
SwissprotQ9FLL02e-61AGL75_ARATH; Agamous-like MADS-box protein AGL75
TrEMBLA0A0D3C0091e-131A0A0D3C009_BRAOL; Uncharacterized protein
TrEMBLA0A3P6CBF51e-131A0A3P6CBF5_BRAOL; Uncharacterized protein
STRINGBo4g139560.11e-131(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56620126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41200.16e-59AGAMOUS-like 75
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]